Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_L21
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.033
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.10
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.24
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.31
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 26 6.7
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 8.8
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.9 bits (74), Expect = 0.033
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = +2
Query: 782 PPTXXTPXPXITXLXXXDPPIPXXTXPXXXXPPPXPSSXPPXPXXXXPXXXP 937
PPT P P I PP P P PP PSS PP P P
Sbjct: 139 PPTSAPPRPSIP------PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Score = 31.1 bits (67), Expect = 0.24
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = +2
Query: 782 PPTXXTPXPXITXLXXXD--PPIPXXTXPXXXXPPPXPSSXPPXPXXXXPXXXP 937
PP+ P + L PP P P PP PS PP P P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.10
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +2
Query: 719 PPSXNTPSXXTAHAVSXXHXLPPTXXTPXPXITXLXXXDPPIPXXTXPXXXXPP-PXPSS 895
PP + PS + VS P P P ++ PP+P P PP P PS+
Sbjct: 986 PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSS---KAPPVP---LPSADAPPIPVPST 1039
Query: 896 XPPXP 910
PP P
Sbjct: 1040 APPVP 1044
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/82 (26%), Positives = 26/82 (31%)
Frame = +2
Query: 665 PXALARSXXPPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXXTPXPXITXLXXXDPPI 844
P L + PP+ T PP P + V P+ P P I
Sbjct: 1023 PVPLPSADAPPIPVPSTAPP---VPIPTSTPPVPKSSSGAPSAPPPVPA------PSSEI 1073
Query: 845 PXXTXPXXXXPPPXPSSXPPXP 910
P P P P PS PP P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVP 1095
Score = 28.7 bits (61), Expect = 1.3
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = +2
Query: 677 ARSXXPPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXXTPXPXITXLXXXDPPIPXXT 856
A S PPV + PS PS A V +PP P P + P +
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSG--APPVPAPSGIPPV---PKPSVAAPPVPKPSVAVPP 1113
Query: 857 XPXXXXPPPXPSSXPPXPXXXXPXXXP 937
P PP P P P P
Sbjct: 1114 VPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 28.7 bits (61), Expect = 1.3
Identities = 25/100 (25%), Positives = 33/100 (33%)
Frame = +2
Query: 626 PAHXRXNVXRPXLPXALARSXXPPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXXTPX 805
P + +V P +P A S PPV + P PS +PP P
Sbjct: 1140 PPVPKPSVAAPPVP---APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV---PP 1193
Query: 806 PXITXLXXXDPPIPXXTXPXXXXPPPXPSSXPPXPXXXXP 925
P PP+P + PPP + P P P
Sbjct: 1194 PSEA------PPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 27.5 bits (58), Expect = 2.9
Identities = 26/104 (25%), Positives = 32/104 (30%)
Frame = +2
Query: 626 PAHXRXNVXRPXLPXALARSXXPPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXXTPX 805
P + +V P +P S PPV + P PS A V P P
Sbjct: 1121 PPVPKPSVAAPPVPVP---SGAPPVPKPSVAAPPVPAPSG--APPVPKPSVAAPPVPAPS 1175
Query: 806 PXITXLXXXDPPIPXXTXPXXXXPPPXPSSXPPXPXXXXPXXXP 937
I PP+P PPP + P P P P
Sbjct: 1176 SGI-------PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 27.1 bits (57), Expect = 3.8
Identities = 22/82 (26%), Positives = 28/82 (34%)
Frame = +2
Query: 692 PPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXXTPXPXITXLXXXDPPIPXXTXPXXX 871
PPV + + P PS A + PP P P T PP+P +
Sbjct: 1012 PPVPKLSSKAPPVPLPSAD-APPIPVPSTAPPV---PIPTST------PPVPKSSSGAPS 1061
Query: 872 XPPPXPSSXPPXPXXXXPXXXP 937
PPP P+ P P P
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAP 1083
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.24
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Frame = +2
Query: 656 PXLPXALARSXXPPVXQKKTIPPSXNTPSXXTAHAV---SXXHXLPPTXXTPXPXITXLX 826
P P + + P +IPP N P AV S + LP T P + +
Sbjct: 216 PATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQHFPGMPAMP 275
Query: 827 XXDPPIPXXTXPXXXXPPPXPSSXPPXP 910
+ P+ P PPP P P
Sbjct: 276 MMNVPMGPGGAPLVPPPPPGMVMASPSP 303
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.31
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Frame = +2
Query: 656 PXLPXA--LARSXXPPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXXTPX--PXITXL 823
P LP +R+ PPV ++PPS PS + S P P P L
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSA-PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 824 XXXDPPIPXXTXPXXXXPPPXPSSXPPXP 910
P P P PPP P+ P P
Sbjct: 460 PAGMPAAPPLP-PAAPAPPPAPAPAPAAP 487
Score = 28.7 bits (61), Expect = 1.3
Identities = 23/91 (25%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Frame = +2
Query: 680 RSXXPPVXQKKTIPPSXNTPSXXTAHAVSXXHXLPPTXX-TPXPXITXLXXXD----PPI 844
RS PP + P ++ AVS PP P + L PP+
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417
Query: 845 PXXTXPXXXXPPPXPSSXPPXPXXXXPXXXP 937
P PP P S PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 27.9 bits (59), Expect = 2.2
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Frame = +2
Query: 656 PXLPXALARSXXPPVXQKKT-IPPSXNTPSXXTAHAVSXXHXLPPTXXTPXPXITXLXXX 832
P +P A + P +T PP PS + S PP+ P L
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
Query: 833 DPPIPXXTXPXXXXPPPXPSSXPPXP 910
P P PP P++ P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +2
Query: 782 PPTXXTPXPXITXLXXXDPPI--PXXTXPXXXXPPPXPSSXPP 904
PP P P + PP P P PPP P+S P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +2
Query: 752 AHAVSXXHXLPPTXXTPXPXITXLXXXDPPIPXXTXPXXXXPPPXPSSXPPXPXXXXP 925
AH VS P + P + PP P + P PP P+ P P P
Sbjct: 1684 AHPVSTPPVRPQSAAPPQ-----MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/48 (29%), Positives = 16/48 (33%)
Frame = +2
Query: 782 PPTXXTPXPXITXLXXXDPPIPXXTXPXXXXPPPXPSSXPPXPXXXXP 925
PP P P + PP P P PPP + P P P
Sbjct: 736 PPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 6.7
Identities = 22/61 (36%), Positives = 26/61 (42%)
Frame = +2
Query: 416 NS*LSPIKYTFPTSISWPTRSPEQRICSEAKWTTLTSAPPKNAADIXNPLGGRTDSXTHK 595
NS +K T I W TR+ RI + + PK I GGRT S THK
Sbjct: 568 NSLFGRVKLNEQTEIIWHTRN--YRIVEALVRKLIHLSTPK----IIPVYGGRTLSCTHK 621
Query: 596 D 598
D
Sbjct: 622 D 622
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 424 TVANKIYVSDQYKLADAFSRTANLFRSEVDNINFSA 531
T+ ++Y S Y++ D S+ + R + N+NF A
Sbjct: 303 TLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFKA 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,033,227
Number of Sequences: 5004
Number of extensions: 56931
Number of successful extensions: 220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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