Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L20
         (1054 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   5.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   5.2  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 412 RXXXPKPXPXXPXPPP 459
           R   P+P P  P PPP
Sbjct: 201 RNYGPEPVPSTPYPPP 216


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +3

Query: 675 PPPPXXRXDTS-PPPPTQKXGAPQNPQXTKHPPH 773
           P  P    D   PPPP      P+NP  T   PH
Sbjct: 724 PLTPHEAFDVKLPPPPHPHHQPPRNPVGTN--PH 755


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = +3

Query: 675 PPPPXXRXDTS-PPPPTQKXGAPQNPQXTKHPPH 773
           P  P    D   PPPP      P+NP  T   PH
Sbjct: 616 PLTPHEAFDVKLPPPPHPHHQPPRNPVGTN--PH 647


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.145    0.502 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,986
Number of Sequences: 336
Number of extensions: 2082
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30104324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)