Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_L20
(1054 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.017
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.12
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.21
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.83
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 28 2.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.017
Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Frame = +3
Query: 525 KKXXPPPPXXXXGXSLLXXTP-PPPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXD 701
K PPP +L PPP P + +N P PPPP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 702 TSPPPPTQKXGAPQNPQXTKHP 767
S P P Q AP P P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAP 370
Score = 31.1 bits (67), Expect = 0.27
Identities = 23/78 (29%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Frame = +3
Query: 519 PXKKXXPPPPXXXXGXSLLXXTPPPPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRX 698
P ++ PP G S PPPP P N P PPPP
Sbjct: 317 PSRRNRGKPPIGN-GSSNSSLPPPPPPPRSNAAGSIPLP-----PQGRSAPPPPPPRSAP 370
Query: 699 DTS-PPPPTQKXGAPQNP 749
T PPP A NP
Sbjct: 371 STGRQPPPLSSSRAVSNP 388
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/77 (24%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Frame = +3
Query: 543 PPXXXXGXSLLXXTPPPPXPXXNXKN-PTXXPQXTXXXXXXXXXXPPPPXXRXDTSPPPP 719
P G + TPP P P + P P PP +PP P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 720 TQKXGAPQNPQXTKHPP 770
AP P PP
Sbjct: 461 AGMPAAPPLPPAAPAPP 477
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.12
Identities = 23/101 (22%), Positives = 29/101 (28%)
Frame = +1
Query: 247 KKKKXGXXXGGGXPPXGGXPPXXKKKXXRXGXXPHQKXRPKKNPXEXKPGXXXKPRXXXP 426
K + G PP PP + + P + P +P P P
Sbjct: 111 KLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS 170
Query: 427 KPXPXXPXPPPRXXXXFFLPPXGGGXXXAXXPKKKXXPPPP 549
P P P P + PP A P PPPP
Sbjct: 171 LPPPAQPAAPVKS------PPSAPSLPSAVPPMPPKVPPPP 205
Score = 30.7 bits (66), Expect = 0.36
Identities = 21/86 (24%), Positives = 23/86 (26%)
Frame = +3
Query: 519 PXKKXXPPPPXXXXGXSLLXXTPPPPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRX 698
P PP P L T PP P +P P PPP
Sbjct: 124 PPSAPAPPTPQS----ELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179
Query: 699 DTSPPPPTQKXGAPQNPQXTKHPPHP 776
PP + P K PP P
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.12
Identities = 22/65 (33%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Frame = +3
Query: 585 PPPPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXDTSPPPPTQKXGAPQNPQXT-K 761
PP P P P P PP P T+PP PT G P P T K
Sbjct: 1179 PPVPKPAAGVP-PVPPPSEAPPVPKPSVGVPPVPPP--STAPPVPTPSAGLPPVPVPTAK 1235
Query: 762 HPPHP 776
PP P
Sbjct: 1236 APPVP 1240
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/59 (27%), Positives = 20/59 (33%)
Frame = +3
Query: 591 PPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXDTSPPPPTQKXGAPQNPQXTKHP 767
PP P + K P P + PP ++PP P GAP P P
Sbjct: 1012 PPVPKLSSKAPPV-PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +3
Query: 585 PPPPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXDTSPPPPTQKXGAPQNPQXTKH 764
PP P P P P PP P PP P G P P ++
Sbjct: 1140 PPVPKPSVAAP-PVPAPSGAPPVPKPSVAAPPVPAPSSGI-PPVPKPAAGVPPVPPPSEA 1197
Query: 765 PPHP 776
PP P
Sbjct: 1198 PPVP 1201
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +3
Query: 591 PPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXDTSPPPPTQKXGAPQNPQXTKH-P 767
PP P + P P PP P +PP P G P P+ P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV-AAPPVPAPSSGIPPVPKPAAGVP 1189
Query: 768 PHP 776
P P
Sbjct: 1190 PVP 1192
Score = 26.2 bits (55), Expect = 7.7
Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Frame = +3
Query: 540 PPPXXXXGXSLLXXTPP---PPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXDTSP 710
PPP + P PP P + P P PP +P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP-VPAPSGAP 1121
Query: 711 PPPTQKXGAPQNPQXTKHPPHP 776
P P AP P + PP P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVP 1143
Score = 26.2 bits (55), Expect = 7.7
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = +3
Query: 585 PPPPXPXXNXKNPTXXPQXTXXXXXXXXXXPPPPXXRXDTSPPPPTQKXGAPQNPQXTKH 764
PP P P P P PP P +PP P AP P +
Sbjct: 1102 PPVPKPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSG--APPVPKPSVAAPPVPAPSGA 1158
Query: 765 PPHP 776
PP P
Sbjct: 1159 PPVP 1162
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.21
Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Frame = +3
Query: 570 LLXXTPPPPXPXXNXKNPTXXPQXTXXXXXXXXX--XPPPPXXRXDTSPPPP 719
LL +PPPP P P P PPPP PPPP
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 537 PPPPXXXXGXSLLXXTPPPPXP 602
PPPP G + PPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.83
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = -2
Query: 546 GGGXXFFFXGXGXXPPPPXGREKKXXXXXGGGXXXXWXGFGGXLSGLXGXAG 391
GGG F G G PP P G G GFGG G G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 376 PXEXKPGXXXKPRXXXPKPXPXXPXPPPR 462
P KP KPR P P P PP R
Sbjct: 154 PVPKKPSKPSKPRKKVPVSHPLPPTPPSR 182
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 537 PPPPXXXXGXSLLXXTPPPPXPXXNXKNPTXXP 635
PPPP G PPPP P K P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.145 0.502
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,904
Number of Sequences: 5004
Number of extensions: 23256
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 553220522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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