Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L19
         (914 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 355  TPNWSRSGARRT*CRRSNATRYTTWPSCWN 444
            +P W+ +  RRT   R   T  TT P+  N
Sbjct: 1049 SPWWTTTTTRRTTTTRPTTTSTTTRPTTTN 1078


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 421  YILSRLTCGTKY 386
            Y L +L CGT+Y
Sbjct: 1452 YTLEKLLCGTRY 1463


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 288 SVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 419
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 707 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 288 SVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 419
           SVA        PY L+SP    +A  V++  PP+   Q  R+ +
Sbjct: 599 SVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPV 642


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,181
Number of Sequences: 336
Number of extensions: 2937
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25547951
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)