Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L18
         (983 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    31   0.33 
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.76 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    28   2.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    28   2.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   4.1  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   7.1  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 323  IGFVNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 183
            I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 917  IHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 505 YWLVTTLSVLPMDLVRFPNS 564
           YW++TTLS+ P DLVR  N+
Sbjct: 108 YWMMTTLSLEPGDLVRVINT 127


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 438 STRTVNESGSSSSKRSCQYPQ*SMSAFVLH 349
           +T TV+ESGSSS+  +  YP  ++S    H
Sbjct: 592 TTSTVSESGSSSASITSTYPSSTLSMTTSH 621


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
 Frame = +3

Query: 414  HSHLPFWWTSEKY-----GALKERRGEVYFYFYQQLLARYYFERLTNGLGKIPEFSWYSP 578
            HSHLPF +T E +     G +KE        + Q+      F      + K    +WY  
Sbjct: 1085 HSHLPFKFTPESFIKIRNGNVKEEARRTRNAYTQKSGEVECFMETCTPIAKPAPANWYPV 1144

Query: 579  IKTGYYPLMLTKFTPFAQRPD 641
               G+   +L++ T   Q  D
Sbjct: 1145 PPPGFNSSLLSRLTQSNQSKD 1165


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 237 KMQHGLINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEEQRLTYF 374
           ++ H L   +   K    K ND F++ +  +N +  N+++ +L YF
Sbjct: 528 RISHTLELQDILVKLSTPKNNDVFIFSSKITNKL--NDDQSKLWYF 571


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 378 EDIGMNAYYYYFHSHLPFWWTSEKYG 455
           +DIGM AY       L F W S+++G
Sbjct: 118 QDIGMIAYVGTIVGQLSFGWYSDRFG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,348
Number of Sequences: 5004
Number of extensions: 57256
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)