Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L17
         (1002 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.34 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.78 
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 18/59 (30%), Positives = 20/59 (33%)
 Frame = +1

Query: 796  PVKRPPLLAXFPXGSPPPXXXXQXXXPPXXXXPXPDXXXKXPXPXPPXNPPXGPXXSHP 972
            PV  PP+    P  + PP        PP    P P      P   P   PP  P  S P
Sbjct: 1686 PVSTPPVR---PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
 Frame = +1

Query: 829  PXGSPPPXXXXQXXXPPXXXXPXPDXXXKXPXPXPPXNP-PXGPXXSHPXXXPXLS 993
            P  +PP     Q   PP    P P        P P   P P GP  + P   P  S
Sbjct: 1686 PVSTPP--VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 20/60 (33%), Positives = 21/60 (35%)
 Frame = -2

Query: 956 GPXGGFXGGXGXGXLXXXSGXGXXXXGGXXXWXXXXGGGEPXGKXASXGGLFTGXGXWXG 777
           G  GGF G  G G      G      GG        GGG P G     GG   G G + G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG-PGGFGGGLGGFGGGPGGFGG 263


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 995 GXRXGXXXGWXXXGPXGGFXGGXGXGXLXXXSGXG 891
           G R G        GP GGF GG G G +    G G
Sbjct: 108 GPRIGGGHHGPLHGPHGGF-GGRGGGRMGGRGGRG 141


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/61 (26%), Positives = 19/61 (31%)
 Frame = +1

Query: 790 PXPVKRPPLLAXFPXGSPPPXXXXQXXXPPXXXXPXPDXXXKXPXPXPPXNPPXGPXXSH 969
           P P K PP+ +  P  + P          P      P    K P P P    P     S 
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP-PPPLSQAPVANTSSR 217

Query: 970 P 972
           P
Sbjct: 218 P 218



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 22/83 (26%), Positives = 24/83 (28%)
 Frame = +1

Query: 754  GKNM*TQRPXQXPXPVKRPPLLAXFPXGSPPPXXXXQXXXPPXXXXPXPDXXXKXPXPXP 933
            GK+  +  P   P P    P     P  S PP        P     P P      P   P
Sbjct: 116  GKSSASAAPPSAPAPPT--PQSELRPPTSAPPRPSIPPPSPASAP-PIPSKAPPIPSSLP 172

Query: 934  PXNPPXGPXXSHPXXXPXLSPFP 1002
            P   P  P  S P      S  P
Sbjct: 173  PPAQPAAPVKSPPSAPSLPSAVP 195


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 817 LAXFPXGSPPPXXXXQXXXPPXXXXPXP 900
           +A  P G+PPP        PP    P P
Sbjct: 1   MASLPPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
 Frame = +1

Query: 808 PPLLAXFPXGSPP--PXXXXQXXXPPXXXXPXPDXXXKXPXPXPPXNPPXGPXXSHPXXX 981
           PPL +     +PP  P        P              P P PP  PP  P    P   
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436

Query: 982 PXL 990
           P L
Sbjct: 437 PSL 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,448
Number of Sequences: 5004
Number of extensions: 41576
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)