Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L17
         (1002 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             30   0.038
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.9 bits (64), Expect = 0.038
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 699  YRSPQPDXRXQXXSEARXRKSAQXANRPFXAGGG 598
            Y  PQP    Q  ++A+ +  +Q AN+P  A GG
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANKPKPATGG 1030


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +1

Query: 892 PXPDXXXKXPXPXPPXNPPXGPXXSHPXXXP 984
           P P    + P    P NP  GP    P   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
 Frame = +1

Query: 784 QXPXPVKRPPLLAXFPXGSPPPXXXXQXXXPPXXXXPXPDXXXKXPXP-----XPPXNPP 948
           Q P PV  P     FP  S  P    Q   P            +   P      PP NP 
Sbjct: 360 QIPVPVPVPIYCGNFPPRSMEPWISMQEQIPRFRHIGPSTPFPRFIPPNAYRFRPPLNPR 419

Query: 949 XGP 957
            GP
Sbjct: 420 FGP 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,390
Number of Sequences: 438
Number of extensions: 5377
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)