Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L16
         (972 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841    188   4e-48
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...   169   2e-42
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...   162   3e-40
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...   133   2e-31
07_01_0080 + 587674-588510                                             29   4.2  
12_02_1193 + 26891619-26892456,26892545-26893884                       29   7.4  
08_02_1238 + 25486263-25487574,25488210-25489117                       28   9.8  
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    28   9.8  

>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
          Length = 133

 Score =  188 bits (459), Expect = 4e-48
 Identities = 93/134 (69%), Positives = 107/134 (79%)
 Frame = +3

Query: 123 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 302
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 303 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 482
           S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 483 VTNAAARLRSQENE 524
           VTN  ARLRSQE+E
Sbjct: 120 VTNKLARLRSQEDE 133


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score =  169 bits (412), Expect = 2e-42
 Identities = 82/122 (67%), Positives = 97/122 (79%)
 Frame = +3

Query: 123 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 302
           MA+ P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59

Query: 303 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 482
           S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I 
Sbjct: 60  SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119

Query: 483 VT 488
           ++
Sbjct: 120 IS 121


>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score =  162 bits (394), Expect = 3e-40
 Identities = 76/102 (74%), Positives = 87/102 (85%)
 Frame = +3

Query: 219 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 398
           +WR+P+GID+RVRR+FKG  LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99  SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158

Query: 399 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQENE 524
            YCAEIAH VS+KKRK IVERA QL I VTN  ARLRSQE+E
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQEDE 200



 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +3

Query: 123 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 215
           MA+ P+    IVKKR K+F R  SDRY  LK
Sbjct: 1   MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score =  133 bits (322), Expect = 2e-31
 Identities = 62/96 (64%), Positives = 76/96 (79%)
 Frame = +3

Query: 111 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 290
           +TY+M + P+    IVKKR K+F R  SDRY  LK +WR+P+GID+RVRR+FKG  LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377

Query: 291 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 398
           IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 864 RPPPRXXXVXXXGAXXXXPXPXPPXPPXXP 953
           RPPP        G+    P P PP PP  P
Sbjct: 90  RPPPPPPPPPSSGSPPPPPPPPPPPPPPPP 119


>12_02_1193 + 26891619-26892456,26892545-26893884
          Length = 725

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 251 SPQAIQGSILDAQHRLRFQQEDPSYAPKWIP*GPSSQC*RAGNLDDAKQEVLRRDRSRCL 430
           +PQ        +Q R+R Q +    APK     PSS    A + DDA++     +R    
Sbjct: 327 NPQKADDEAGPSQKRMRGQVK---LAPKKRRVPPSSDS-DADDEDDAEEHDGEEEREEEE 382

Query: 431 FEEAEADRGKSPAAQHQSDECGRSP-PVPG 517
             EA AD+    A + ++D  G +P P PG
Sbjct: 383 EVEAVADKATGEAVEDRADTPGYTPTPGPG 412


>08_02_1238 + 25486263-25487574,25488210-25489117
          Length = 739

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -2

Query: 464 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 381
           G+ H+Q P L    RRD V+D+ A L  +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497


>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 213 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 374
           + N +K +G D   +    G    P      ++K+R +  NGFRKV     HN   L   
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305

Query: 375 EILMMQNRKYCAEIAH 422
           ++L+  N KY A   H
Sbjct: 306 DLLIFSNEKYMAVSLH 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,098,669
Number of Sequences: 37544
Number of extensions: 370038
Number of successful extensions: 1368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)