Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L15
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.18 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.54 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.94 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   2.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.9  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +3

Query: 783 PXPXPXXXXPXXXPXXXAXAXP-PLXXGXSXPPXXPXXPPXXPXPPPPTP 929
           P P P    P   P       P P+  G   PP  P      P PPPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 20/61 (32%), Positives = 23/61 (37%)
 Frame = +2

Query: 749 PXXITIPXXXSPXPXPXPXXPXXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPPPHP 928
           P  + +P   +P P P P  P  P       PPP  G     PP P         PPP P
Sbjct: 736 PPAVIVP---TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---------PPPPP 783

Query: 929 A 931
           A
Sbjct: 784 A 784



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +2

Query: 779 SPXPXPXPXXPXXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPPPHP 928
           SP P P       P       PPP+       PP P    +   PPPP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +2

Query: 800 PXXPXXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPPP 922
           P  P      AG  P P  GR    PP P +  S    PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
 Frame = +3

Query: 780 LPXPXPXXXXPXXXPXXX--AXAXPPLXXGXSXPPXXPXXPPXXPXPPPPTP 929
           LP   P    P   P     A A PPL       P  P   P  P  PP  P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 834 AXAXPPLXXGXSXPPXXPXXPPXXPXPPPPTP 929
           A   PPL  G    P  P   P  P  P P P
Sbjct: 453 APIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 842 PPPSXGRXLXXPPXPXTXXSXXXPPPPHP 928
           PPP   R    PP      +   PPPP P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 907 RPPPPPP 927
           RPPPPPP
Sbjct: 310 RPPPPPP 316



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 910 PPPPPPR 930
           PPPPPPR
Sbjct: 338 PPPPPPR 344


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 26/111 (23%), Positives = 37/111 (33%)
 Frame = +2

Query: 599  PPLPXLLXXXPSSPLPKXSCHSRPCPQXPXSTXFFXLXGRAIPNFEFLXIPXXITIPXXX 778
            PP+P      P  P P  +    P P+   +     +   A P  +       +  P   
Sbjct: 1102 PPVPKPSVAVPPVPAPSGA---PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158

Query: 779  SPXPXPXPXXPXXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPPPHPA 931
             P P P    P  P   +G  P P     +  PP P    +   PP P P+
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGV--PPVPPPSEA---PPVPKPS 1204



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 35/124 (28%), Positives = 44/124 (35%), Gaps = 1/124 (0%)
 Frame = +2

Query: 563  VFTSMFDYLXTXPPLPXLLXXXPSSPLPKXSCHSRPCPQXPXSTXFFXLXGRAIPNFEFL 742
            V TS    L   PP+P L    P  PLP  S  + P P  P +     +     P     
Sbjct: 1000 VSTSPAAPLARVPPVPKLSSKAPPVPLP--SADAPPIP-VPSTAPPVPIPTSTPP----- 1051

Query: 743  XIPXXIT-IPXXXSPXPXPXPXXPXXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPP 919
             +P   +  P    P P P    P  P   +G  P P+       PP P    S   PP 
Sbjct: 1052 -VPKSSSGAPSAPPPVPAPSSEIPSIP-APSGAPPVPAPS---GIPPVP--KPSVAAPPV 1104

Query: 920  PHPA 931
            P P+
Sbjct: 1105 PKPS 1108



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +3

Query: 783  PXPXPXXXXPXXXPXXXAXAXPPLXXGXSXPPXXPXXPPXXPXPPPPTP 929
            P P P    P   P   A   P    G       P  PP    PP PTP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGV------PPVPPPSTAPPVPTP 1222


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = +3

Query: 822  PXXXAXAXPPLXXGXSXPPXXPXXPPXXP-XPPPPTP 929
            P   A   PP       PP  P  P   P  PPPP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 19/57 (33%), Positives = 19/57 (33%)
 Frame = +2

Query: 761  TIPXXXSPXPXPXPXXPXXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPPPHPA 931
            T P        P    P  P       PPPS       PP P    S   PPPP PA
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA------PPMPAGPPSA--PPPPLPA 1737


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 246 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 118
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +2

Query: 272 ASSTLRAPPSAGTSXRKYGLAGANDEEAFEIDQNVEFLHDIR 397
           A STL+  PS   +   Y    A+ ++A ++DQ + F+++++
Sbjct: 319 APSTLQFNPSPSPAAPSYPPVDASVKQAADLDQAINFVNNVK 360


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 368 QNVEFLHDIRAKAAAVYYQADEELKAKKHEDFSKNVY 478
           Q+V+FL + +  +  V Y+ ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 185 SKTTACSPLTGLTSSQRLRSVRCQY**STASSTLRAPPSAGTS 313
           SKT++ + L GL    R  S+          STL APP+A TS
Sbjct: 617 SKTSSSTRLNGLGYHSRNTSIASDIDGVPKKSTLGAPPAAHTS 659


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = +3

Query: 852 LXXGXSXPPXXPXX--PPXXPXPPPP 923
           L  G   PP  P    PP  P PPPP
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = +2

Query: 767 PXXXSPXPXPXPXXP-XXPXXXAGXXPPPSXGRXLXXPPXPXTXXSXXXPPPP 922
           P    P P   P  P   P   +   PP      +  PP   +  S   P PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/51 (27%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
 Frame = +3

Query: 783 PXPXPXXXXPXXXPXXXAXAXPPLXXGX--SXPPXXPXXPPXXPXPPPPTP 929
           P P      P   P   +   PP         PP  P  P   P  PP  P
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,293
Number of Sequences: 5004
Number of extensions: 45906
Number of successful extensions: 270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)