Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L15
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.0  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   9.2  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 910  PPPPPPR 930
            PPPPPPR
Sbjct: 1859 PPPPPPR 1865


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 897 PXXPXPPPPTP 929
           P  P PPPP P
Sbjct: 338 PPKPAPPPPPP 348


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 445 CF*LLISLVVYSGRFGANIVQEL 377
           C     ++V  SG F  NIVQEL
Sbjct: 65  CILKQFNIVDESGNFKENIVQEL 87


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 445 CF*LLISLVVYSGRFGANIVQEL 377
           C     ++V  SG F  NIVQEL
Sbjct: 65  CILKQFNIVDESGNFKENIVQEL 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,298
Number of Sequences: 438
Number of extensions: 4937
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)