Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L14
         (997 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.26 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.61 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 463 PPLPEKKNPHPXPXXGGXDPPPXPPPXPPXXXTPAKV 573
           P  P++ +P P P  G   PPP  PP  P    P+++
Sbjct: 31  PQAPQRGSP-PNPSQG---PPPGGPPGAPPSQNPSQM 63



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
 Frame = +2

Query: 938 PPPXKXPPXXGPP--PPPTXP 994
           P P + PP  GPP  PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +1

Query: 484 NPHPXPXXGGXDPPPXPPPXPPXXXTP 564
           +PH  P       PP P   PP    P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 957 PPXXGPPPPPP 989
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 508 GGXDPPPXPPPXPP 549
           G  D PP P P PP
Sbjct: 333 GDSDTPPKPAPPPP 346



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 520 PPPXPPPXPPXXXTP 564
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +1

Query: 499  PXXGGXDPPPXPP 537
            P  G  +PPP PP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 490 HPXPXXGGXDPPPXPPPXPP 549
           HP P  G  D PP   P PP
Sbjct: 284 HPDP--GEVDLPPETQPTPP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.146    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,403
Number of Sequences: 438
Number of extensions: 5226
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)