Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L13
         (948 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 671 PPPPPPP 691
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 143  PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTV 271
            P  K + ++     + S   P TT   +T T  STT   T TV
Sbjct: 1157 PGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTV 1199



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 644  PXXPPXXXXPPPPPPPXXPXLPXXPXP 724
            P   P    PP PP    P LP    P
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLPEELKP 1393


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -3

Query: 724 GXGXXGXGGGXGGGXXGXXXGGXG 653
           G      GGG GGG  G    G G
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGGG 108



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 692 GGGXXGXXXXXXGXGGGDXXSR 627
           GGG  G      G GGG+   R
Sbjct: 92  GGGRGGGRDGDRGDGGGEEKKR 113


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 653 PPXXXXPPPPPPPXXPXLPXXP 718
           PP    PP P PP  P     P
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINP 196


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,084
Number of Sequences: 336
Number of extensions: 4053
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)