Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_L12
(1007 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.009
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.45
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.59
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 30 0.59
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.4
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 4.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/72 (36%), Positives = 26/72 (36%)
Frame = +2
Query: 764 LXXPPXPPPGXPXPFXXXXRXPXFPPXGGAGXXPXXPGXXEPPGXGXAAPPXAXRWXXPP 943
L PP PPP P P PP G P P PPG A PP PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP---PPPGVAGAGPP-------PP 778
Query: 944 PRXTPAFXXGXS 979
P PA G S
Sbjct: 779 PPPPPAVSAGGS 790
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 911 PPXAXRWXXPPPRXTPAFXXGXSPRSPXPP 1000
PP A PPP P G P P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.9 bits (79), Expect = 0.009
Identities = 24/77 (31%), Positives = 27/77 (35%)
Frame = +2
Query: 773 PPXPPPGXPXPFXXXXRXPXFPPXGGAGXXPXXPGXXEPPGXGXAAPPXAXRWXXPPPRX 952
PP PPP P P PP G A P PP +APP PP
Sbjct: 388 PPAPPPAIPG-----RSAPALPPLGNASRTSTPP-VPTPPSLPPSAPPSL------PPSA 435
Query: 953 TPAFXXGXSPRSPXPPT 1003
P+ G P PP+
Sbjct: 436 PPSLPMGAPAAPPLPPS 452
Score = 29.1 bits (62), Expect = 1.0
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +2
Query: 773 PPXPPPGXPXPFXXXXRXPXFPPXGGAGXX--PXXPGXXEPPGXGXAAPPXAXRWXXPPP 946
PP PP P P P P A P P P AAPP PPP
Sbjct: 420 PPSLPPSAP-PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Query: 947 RXTPA 961
PA
Sbjct: 479 APAPA 483
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.45
Identities = 24/78 (30%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = -3
Query: 1005 FVGGXGERGEXPXKKAGVXRGGGXXXRXAXGGAAXPXPGG-SXXPGXXGXXPAPPXGGKX 829
F GG G P G GG G PGG PG G P GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLG 252
Query: 828 GQRXXXXKGXGXPGGGXG 775
G G PGG G
Sbjct: 253 GFGGGPGGFGGGPGGHGG 270
Score = 26.6 bits (56), Expect = 5.5
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = -3
Query: 945 GGGXXXRXAXGGAAXPXPGGSXXPGXXGXXPAPPXGGKXGQRXXXXKGXGXPGGGXGG 772
GGG G P PGG G G GG G G PGG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG-GEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.59
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = +2
Query: 776 PXPPPGXPXPFXXXXRXPXFPPXGGAGXXPXXPGXXEPPGXGXAAPPXAXRWXXPPPRXT 955
P PP P P P P GA P G P AAPP PP
Sbjct: 1060 PSAPPPVPAP---SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA 1116
Query: 956 PA 961
P+
Sbjct: 1117 PS 1118
Score = 25.8 bits (54), Expect = 9.7
Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Frame = +2
Query: 773 PPXPPPGX--PXPFXXXXRXPXFPPXGGAGXXPXXPGXXEPPGXGXAAPPXAXRWXXPP- 943
PP P P P P P P P G P AAPP PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 944 PRXTPAFXXGXSPRSPXP 997
P+ + A +P P
Sbjct: 1143 PKPSVAAPPVPAPSGAPP 1160
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 785 PPGXPXPFXXXXRXPXFPPXGGAGXXPXXPG 877
PPG P PF P P GA P PG
Sbjct: 532 PPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 773 PPXPPPGXPXPFXXXXRXPXFPPXGGAGXXPXXPGXXEPPG 895
PP PPG P P +P P PG PPG
Sbjct: 522 PPMVPPGMALPPGMPAPFPGYP---AVPAMPGIPGATAPPG 559
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 2/78 (2%)
Frame = +2
Query: 773 PPXPPPGXPXPFXXXXRXPXFPPXGGAGXXPXXPGXXEP--PGXGXAAPPXAXRWXXPPP 946
P PPP + P P P P P P A PP + PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Query: 947 RXTPAFXXGXSPRSPXPP 1000
P P S PP
Sbjct: 207 SQAPVANTSSRPSSFAPP 224
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein Lsb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 863 PXXPGXXEPPGXGXAAPPXAXRWXXPPPRXTPAFXXGXSPRSPXPP 1000
P P PP +APP + PP+ P P++P P
Sbjct: 208 PPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQP 253
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 4.2
Identities = 22/73 (30%), Positives = 24/73 (32%)
Frame = -3
Query: 990 GERGEXPXKKAGVXRGGGXXXRXAXGGAAXPXPGGSXXPGXXGXXPAPPXGGKXGQRXXX 811
G RG + G RGG R GG GG G GG+ G R
Sbjct: 6 GSRGGRGGSRGG--RGGFNGGRGGFGGGRGGARGGGRGGARGGR------GGRGGARGGR 57
Query: 810 XKGXGXPGGGXGG 772
G GG GG
Sbjct: 58 GGSSGGRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 863 PXXPGXXEPPGXGXAAPPXAXRWXXPPPRXTPAFXXGXSPRSPXPP 1000
P P PP PP PPP P P +P PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP--MPAGPPSAPPPP 1734
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = -3
Query: 996 GXGERGEXPXKKAGVXRGGGXXXRXAXGGAAXPXPGGSXXPGXXGXXPAPPXGGKXGQ 823
G G RG + G G G R GG + GG G G GG G+
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRGR 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,621
Number of Sequences: 5004
Number of extensions: 19433
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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