Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L11
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.98 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.98 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
 Frame = +1

Query: 739  P*GXPPPLIPKXCXXXXPXXPHLXPXXLPPPXLSXXXDPXP-------PXXXXGXXRAKX 897
            P G PP  +PK      P         +P P ++    P P       P    G      
Sbjct: 1136 PSGAPP--VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193

Query: 898  XXSPPPXPXPKXXXXPXPPP 957
                PP P P     P PPP
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPP 1213



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 21/93 (22%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
 Frame = +1

Query: 700  IPGSDNHLXXXXXP*GXPP-------PLIPKXCXXXXPXXPHLXPXXLPPPXLSXXXDPX 858
            +P   + +     P G PP       P +PK      P      P    PP  +    P 
Sbjct: 1066 VPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK---PSVAVPPVPAPSGAPP 1122

Query: 859  PPXXXXGXXRAKXXXSPPPXPXPKXXXXPXPPP 957
             P               PP P P     P P P
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.98
 Identities = 19/69 (27%), Positives = 20/69 (28%)
 Frame = +1

Query: 751 PPPLIPKXCXXXXPXXPHLXPXXLPPPXLSXXXDPXPPXXXXGXXRAKXXXSPPPXPXPK 930
           P PL+P            L     PPP       P P         A     PPP P P 
Sbjct: 710 PSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPP-APIMGGPPPPPPPP 768

Query: 931 XXXXPXPPP 957
                 PPP
Sbjct: 769 GVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +1

Query: 799 PHLXPXXLPPPXLSXXXDPXPPXXXXGXXRAKXXXSPPPXP 921
           P   P  +PPP       P PP    G   A     PPP P
Sbjct: 744 PAPAPIPVPPPA-PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/63 (25%), Positives = 18/63 (28%)
 Frame = +1

Query: 739 P*GXPPPLIPKXCXXXXPXXPHLXPXXLPPPXLSXXXDPXPPXXXXGXXRAKXXXSPPPX 918
           P   PP   P       P  P   P   P P  +    P P              +PPP 
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479

Query: 919 PXP 927
           P P
Sbjct: 480 PAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,724
Number of Sequences: 5004
Number of extensions: 33508
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)