Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L10
         (952 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    31   1.5  
At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.5  
At2g07880.1 68415.m01007 hypothetical protein                          29   3.4  
At5g48385.1 68418.m05980 expressed protein                             29   6.0  
At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR cla...    29   6.0  

>At5g61240.1 68418.m07681 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 380

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 567 FLILRRMSSVTVSHINIYWLGVKRRKRWNR 478
           +L    MSS  + H+NIY + + R  RWN+
Sbjct: 157 YLCHHNMSSFQILHLNIYSVVITRNLRWNK 186


>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 229 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDI 405
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 406 GLDQPIESHRNTR 444
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At2g07880.1 68415.m01007 hypothetical protein
          Length = 173

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 376 IEHSHHTVDIGLDQPIESHRNTRDLRFLYPRGKLPVPTLPPFNPKPIYIDMGNRYRRHAS 555
           +E+ HH     LDQ +  H     L F  P    P   LPP + +PI +  G R   H S
Sbjct: 63  VEYHHHH---SLDQSLYQHGRVPPLSFTRPITLPPSRVLPPPSTRPITLPHG-RVPYHHS 118

Query: 556 ED 561
            D
Sbjct: 119 LD 120


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 469 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 293
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 292 EESDGLRY 269
            E     Y
Sbjct: 61  LEDQEKEY 68


>At5g47280.1 68418.m05829 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 222 LASLSHCTCYRALCWRWPEGRLDEPLARSLSKEQHQN*T 106
           L SL + TCYR   W W E     P  R  + E+  N T
Sbjct: 581 LTSLCYVTCYREALWMWKEVEKAVPGLRIEATEKWFNMT 619


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,327
Number of Sequences: 28952
Number of extensions: 416651
Number of successful extensions: 1132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)