Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L09
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.23 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.7  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 821 PXPGXGWGVXXXXXPPPXXXXXXXPPPPXPPP 916
           P P    G      PPP       PPPP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 863 PPPXXXXXXXPPPPXPP 913
           PPP       PPPP PP
Sbjct: 14  PPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 863 PPPXXXXXXXPPPPXPPP 916
           PPP        PPP PPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 508 KYFIDFQFYNITFITKKTLADINFKLYLKLNVLL 407
           K FI+F F+NIT  +K T       L + L + L
Sbjct: 706 KDFIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,762
Number of Sequences: 5004
Number of extensions: 41223
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)