Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L08
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.76 
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  32   0.76 
SB_19502| Best HMM Match : UPF0181 (HMM E-Value=1.2)                   28   9.4  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P        P  P P P     P
Sbjct: 189 PPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNP 231


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P    Q   P  P P P     P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411



 Score = 31.5 bits (68), Expect = 1.0
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P        P  P P P     P
Sbjct: 378 PPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P        P  P P P     P
Sbjct: 386 PPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428



 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P    +  PP P        P  P P P     P
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = +2

Query: 629 PXATCGTXTLXXXLXXPPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           P A     +    +  PP  PP P P       PP P        P  P P P     P
Sbjct: 350 PRAIVTDISAGINMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P        P  P P P     P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P        P  P P P     P
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424



 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTPXXXXGP 805
           PP  PP P P       PP P        P  P P P     P
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPP 417



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTP 787
           PP  PP P P       PP P        P  P P P
Sbjct: 395 PPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431



 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 677 PPXXPPXPXPKXLXKXHPPXPXXXXQKXXPXXPCPTP 787
           PP  PP P P       PP P        P  P P P
Sbjct: 396 PPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432


>SB_19502| Best HMM Match : UPF0181 (HMM E-Value=1.2)
          Length = 423

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 307 CWGTSTTAPSSCRPSVAFRWQ 245
           CWGT  + PSS +PS+   W+
Sbjct: 193 CWGTRQS-PSSAKPSIRLMWK 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,680
Number of Sequences: 59808
Number of extensions: 403140
Number of successful extensions: 1278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)