Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L06
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.009
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.33 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.4  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   7.1  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   7.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 25/69 (36%), Positives = 25/69 (36%)
 Frame = -3

Query: 980 GGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLGGGXXXXPQXXGPGG 801
           GGG  G       FGG G FGG        G      G  E  P  GG    P   G GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP--GGFGGGPGGFG-GG 250

Query: 800 XGXMXGGRG 774
            G   GG G
Sbjct: 251 LGGFGGGPG 259



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = -3

Query: 845 GGGXXXXPQXXGPGGXGXM--XGGRGRXXXXQTAFXGGVG 732
           GGG    P   GPGG G     GG G        F GG G
Sbjct: 194 GGGSGGPP--PGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +1

Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXP 870
           P PP  AV      P P  I   PP P   G    PPP G     P
Sbjct: 732 PPPPPPAVIVPTPAPAP--IPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +1

Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPP 846
           PTP    +      P+     P PP P   G    PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 916 PPXXPKPPXXXXXAXFPXGPPPP 984
           PP  P PP        P  PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 21/83 (25%), Positives = 23/83 (27%)
 Frame = +1

Query: 733  PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
            P+ P         +P  P     PP P   G    P P       P      P       
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119

Query: 913  XPPXXPKPPXXXXXAXFPXGPPP 981
             PP  PKP         P G PP
Sbjct: 1120 APP-VPKPSVAAPPVPVPSGAPP 1141



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
 Frame = +1

Query: 775  PLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXP-XXRGXTPXTXFXXXXPPXXP---KPPX 942
            P+P      PP P   G    P P       P    G  P        PP  P    PP 
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200

Query: 943  XXXXAXFPXGPPP 981
                   P  PPP
Sbjct: 1201 PKPSVGVPPVPPP 1213


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 25/103 (24%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
 Frame = +1

Query: 682 SRFRGEVWEGFSXLNXXPTPPXKAVXXXXXLPLPPXI--XPXPPGPXXCGXXXXPPPXGX 855
           +R +  +  G S  +  P PP         +PLPP     P PP P         PP   
Sbjct: 321 NRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP-L 379

Query: 856 XSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPXGPPPP 984
            S         P         P  P P         P  P PP
Sbjct: 380 SSSRAVSNPPAPPPAIPGRSAPALP-PLGNASRTSTPPVPTPP 421


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -1

Query: 292 HCGTSHGPTWS---TKSWTSGFSQSGSAI 215
           + GT H P+WS   + +W +G S  G AI
Sbjct: 45  YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 195 NVHLSGIFSLENVAR*RNRQLPQ 127
           N+H+SGI +LENV   +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,354
Number of Sequences: 5004
Number of extensions: 48252
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)