Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_L06
(988 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 44 2e-04
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 38 0.008
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.011
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.011
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.011
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.078
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.078
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.078
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 35 0.10
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 33 0.24
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.72
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 30 2.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 25 2.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.9
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.9
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.9
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.9
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.9
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 29 5.1
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 29 5.1
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 6.7
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 6.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 6.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 6.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.7
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 28 8.9
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 8.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 28 8.9
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 8.9
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 28 8.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 8.9
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 8.9
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 8.9
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 28 8.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCG--XXXXPPPXGXXSXXPXXRGXTPXTXFX 906
P PP +P P + P PP P G PPP G P G P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323
Query: 907 XXXPP-XXPKPPXXXXXAXFPXGPPPP 984
PP PP +P G PPP
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPP 350
Score = 34.7 bits (76), Expect = 0.10
Identities = 24/84 (28%), Positives = 26/84 (30%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
P PP + P PP P PPG PPP P G P
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGM----PPPPPPSRFGPPGMGGMPPPPPPGMR 342
Query: 913 XPPXXPKPPXXXXXAXFPXGPPPP 984
P P PP + P PPP
Sbjct: 343 YPGGMPPPPPPRYPSAGPGMYPPP 366
Score = 34.3 bits (75), Expect = 0.14
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXX---SXXPXXRGXTPXTXF 903
P PP + +PP P GP G PPP G P P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 360
Query: 904 XXXXPPXXPKPPXXXXXAXFPXGPPPP 984
PP +PP PPPP
Sbjct: 361 GMYPPPPPSRPPAPPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCG--XXXXPPPXGXXSXXPXXRGXTPXTXFX 906
P PP +P P + P PP P G PPP G P G P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333
Query: 907 XXXPP-XXPKPPXXXXXAXFPXGPPPP 984
PP PP +P G PPP
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPP 360
Score = 34.7 bits (76), Expect = 0.10
Identities = 24/84 (28%), Positives = 26/84 (30%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
P PP + P PP P PPG PPP P G P
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGM----PPPPPPSRFGPPGMGGMPPPPPPGMR 352
Query: 913 XPPXXPKPPXXXXXAXFPXGPPPP 984
P P PP + P PPP
Sbjct: 353 YPGGMPPPPPPRYPSAGPGMYPPP 376
Score = 34.3 bits (75), Expect = 0.14
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXX---SXXPXXRGXTPXTXF 903
P PP + +PP P GP G PPP G P P
Sbjct: 311 PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGP 370
Query: 904 XXXXPPXXPKPPXXXXXAXFPXGPPPP 984
PP +PP PPPP
Sbjct: 371 GMYPPPPPSRPPAPPSGHGMIPPPPPP 397
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 38.3 bits (85), Expect = 0.008
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 165 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGK 335
P RK +G+ + C EP C ENPE D V C C C + VR++ TGK
Sbjct: 71 PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124
Query: 336 CVPESEC 356
CV +++C
Sbjct: 125 CVEKNKC 131
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.9 bits (84), Expect = 0.011
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +1
Query: 796 PXPPG--PXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPX 969
P PPG P G PPP G P G P PP P PP F
Sbjct: 729 PPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPP----PGGFKG 782
Query: 970 GPPPP 984
GPPPP
Sbjct: 783 GPPPP 787
Score = 35.9 bits (79), Expect = 0.044
Identities = 22/71 (30%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Frame = +1
Query: 778 LPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPP--XXPKPPXXXX 951
LPP PP P PPP P G P PP P PP
Sbjct: 706 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 952 XAXFPXGPPPP 984
P PPPP
Sbjct: 766 GGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.9 bits (84), Expect = 0.011
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +1
Query: 796 PXPPG--PXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPX 969
P PPG P G PPP G P G P PP P PP F
Sbjct: 729 PPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPP----PGGFKG 782
Query: 970 GPPPP 984
GPPPP
Sbjct: 783 GPPPP 787
Score = 35.9 bits (79), Expect = 0.044
Identities = 22/71 (30%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Frame = +1
Query: 778 LPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPP--XXPKPPXXXX 951
LPP PP P PPP P G P PP P PP
Sbjct: 706 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 765
Query: 952 XAXFPXGPPPP 984
P PPPP
Sbjct: 766 GGCPPPPPPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.9 bits (84), Expect = 0.011
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Frame = +1
Query: 796 PXPPG--PXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPX 969
P PPG P G PPP G P G P PP P PP F
Sbjct: 312 PPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPPP----PGGFKG 365
Query: 970 GPPPP 984
GPPPP
Sbjct: 366 GPPPP 370
Score = 35.9 bits (79), Expect = 0.044
Identities = 22/71 (30%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Frame = +1
Query: 778 LPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPP--XXPKPPXXXX 951
LPP PP P PPP P G P PP P PP
Sbjct: 289 LPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPP 348
Query: 952 XAXFPXGPPPP 984
P PPPP
Sbjct: 349 GGCPPPPPPPP 359
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.1 bits (77), Expect = 0.078
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +1
Query: 781 PPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAX 960
PP P P G PPP S P G P PP P A
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP-PPPRAG 295
Query: 961 FPXGPPPP 984
P PPPP
Sbjct: 296 SPPPPPPP 303
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/87 (27%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
P PP PP P P G PP G P RG
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG---------- 305
Query: 913 XPPXXPKPPXXXXXAXFPXG---PPPP 984
PP PP + P G PPPP
Sbjct: 306 SPPTGSLPPPQAGGSPPPAGTGSPPPP 332
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/72 (27%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Frame = +1
Query: 775 PLPPXIXPXPPGPXXCGXXXX---PPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXX 945
P PP PP P G PPP S P G P P P
Sbjct: 289 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 348
Query: 946 XXXAXFPXGPPP 981
P G PP
Sbjct: 349 PPTGSPPTGRPP 360
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.1 bits (77), Expect = 0.078
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +1
Query: 781 PPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAX 960
PP P P G PPP S P G P PP P A
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP-PPPRAG 316
Query: 961 FPXGPPPP 984
P PPPP
Sbjct: 317 SPPPPPPP 324
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/87 (27%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
P PP PP P P G PP G P RG
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG---------- 326
Query: 913 XPPXXPKPPXXXXXAXFPXG---PPPP 984
PP PP + P G PPPP
Sbjct: 327 SPPTGSLPPPQAGGSPPPAGTGSPPPP 353
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/72 (27%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Frame = +1
Query: 775 PLPPXIXPXPPGPXXCGXXXX---PPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXX 945
P PP PP P G PPP S P G P P P
Sbjct: 310 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 369
Query: 946 XXXAXFPXGPPP 981
P G PP
Sbjct: 370 PPTGSPPTGRPP 381
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.1 bits (77), Expect = 0.078
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = +1
Query: 781 PPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAX 960
PP P P G PPP S P G P PP P A
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP-PPPRAG 301
Query: 961 FPXGPPPP 984
P PPPP
Sbjct: 302 SPPPPPPP 309
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/87 (27%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
P PP PP P P G PP G P RG
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG---------- 311
Query: 913 XPPXXPKPPXXXXXAXFPXG---PPPP 984
PP PP + P G PPPP
Sbjct: 312 SPPTGSLPPPQAGGSPPPAGTGSPPPP 338
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/72 (27%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Frame = +1
Query: 775 PLPPXIXPXPPGPXXCGXXXX---PPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXX 945
P PP PP P G PPP S P G P P P
Sbjct: 295 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 354
Query: 946 XXXAXFPXGPPP 981
P G PP
Sbjct: 355 PPTGSPPTGRPP 366
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 34.7 bits (76), Expect = 0.10
Identities = 24/72 (33%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Frame = +1
Query: 775 PLPPXIXPXPPGPXXCGXXXXPPP--XGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXX 948
P+P P PPGP G PPP G P G P PP P PP
Sbjct: 68 PVPNGFIPPPPGP---GGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPP-PPPPPSGL 123
Query: 949 XXAXFPXGPPPP 984
A P P P
Sbjct: 124 GVAPQPPRPKTP 135
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 33.5 bits (73), Expect = 0.24
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 207 CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 356
C QM P CE+P VD C P C C P + + +C+P + C
Sbjct: 38 CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 33.5 bits (73), Expect = 0.24
Identities = 24/84 (28%), Positives = 28/84 (33%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLGGGXXXXPQXXGPG 804
GGGG G GG G GG + G G + GGG G G
Sbjct: 120 GGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGG 179
Query: 803 GXGXMXGGRGRXXXXQTAFXGGVG 732
G GG G + GG+G
Sbjct: 180 DGG--YGGGGFGGGGMGGYGGGMG 201
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/82 (29%), Positives = 26/82 (31%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLGGGXXXXPQXXGPG 804
GGGG G +GG G GG G G P G G G G
Sbjct: 100 GGGGDFGGGMGGGGYGGGGYGGGGDGGGGYGGYGGGGYGGMGGGPGGYGMGG---YGGGG 156
Query: 803 GXGXMXGGRGRXXXXQTAFXGG 738
G G GG G + GG
Sbjct: 157 GGGGDFGGYGGGGMGGGGYGGG 178
Score = 29.1 bits (62), Expect = 5.1
Identities = 22/84 (26%), Positives = 24/84 (28%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLGGGXXXXPQXXGPG 804
G GG G +GG G GG G G GGG G
Sbjct: 151 GYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGM 210
Query: 803 GXGXMXGGRGRXXXXQTAFXGGVG 732
G G GG + GG G
Sbjct: 211 GGGGYGGGGDGGYGPSGGYGGGYG 234
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.9 bits (69), Expect = 0.72
Identities = 22/82 (26%), Positives = 22/82 (26%)
Frame = +1
Query: 739 PPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXP 918
PP P PP I PP P G PPP P F
Sbjct: 695 PPGVPPMFNLNAPPPPGIPGYPPAPPPPG--VGPPPPQGIPPMGFDPNKPPPPMFQQGFN 752
Query: 919 PXXPKPPXXXXXAXFPXGPPPP 984
P PP PPPP
Sbjct: 753 AGAPPPPFGRGAGPMSSFPPPP 774
Score = 31.1 bits (67), Expect = 1.3
Identities = 27/96 (28%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Frame = +1
Query: 739 PPXKAVXXXXXLPLPPXIXPXPPG---PXXCGXXXXPPPX------GXXSXXPXXRGXTP 891
PP + P PP + P PP P PPP P RG P
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGP 766
Query: 892 XTXFXXXXPPXX-----PKPPXXXXXAXFPXGPPPP 984
+ F PP P PP GPPPP
Sbjct: 767 MSSFPP--PPRGGMHHMPPPPSFRGGRGGHGGPPPP 800
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 177 CPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 356
C GE C M P+ ++ + P P+C C NVRN TG +P
Sbjct: 30 CTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPPKCVCTEGNVRNIITGPSLPALFK 86
Query: 357 **NCVN 374
NCV+
Sbjct: 87 PYNCVS 92
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 25.4 bits (53), Expect(2) = 2.4
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Frame = +1
Query: 781 PPXIXPXPPGP-XXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKP 936
PP P PPGP G P G G P PP P P
Sbjct: 713 PPQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPPP 765
Score = 23.0 bits (47), Expect(2) = 2.4
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +1
Query: 919 PXXPKPPXXXXXAXFPXGPP 978
P P+PP P GPP
Sbjct: 804 PGGPRPPYPYPGGPVPPGPP 823
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/63 (31%), Positives = 21/63 (33%)
Frame = +1
Query: 796 PXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPXGP 975
P PP P G PPP P G P + PP P P P P
Sbjct: 489 PPPPMPSINGHAPNPPPP------PPLLGIAPMST---NAPPPPPMPGMAPLSTGAPTPP 539
Query: 976 PPP 984
PPP
Sbjct: 540 PPP 542
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLG-GGXXXXPQXXGP 807
GGGG G GG G +GG G + G GG Q G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280
Query: 806 GGXGXM-XGGRGRXXXXQTAFXGGVG 732
GG G GG+G Q GG G
Sbjct: 281 GGWGQQGGGGQGGWGGPQQQQQGGWG 306
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLG-GGXXXXPQXXGP 807
GGGG G GG G +GG G + G GG Q G
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 242
Query: 806 GGXGXM-XGGRGRXXXXQTAFXGGVG 732
GG G GG+G Q GG G
Sbjct: 243 GGWGQQGGGGQGGWGGPQQQQQGGWG 268
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLG-GGXXXXPQXXGP 807
GGGG G GG G +GG G + G GG Q G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280
Query: 806 GGXGXM-XGGRGRXXXXQTAFXGGVG 732
GG G GG+G Q GG G
Sbjct: 281 GGWGQQGGGGQGGWGGPQQQQQGGWG 306
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Frame = +1
Query: 781 PPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXF--XXXXPPXXPKPPXXXXX 954
PP PP P PPP G P P F PP P PP
Sbjct: 271 PPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMG 330
Query: 955 AXFPXGPPP 981
PPP
Sbjct: 331 PPRGFMPPP 339
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Frame = +1
Query: 781 PPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXF--XXXXPPXXPKPPXXXXX 954
PP PP P PPP G P P F PP P PP
Sbjct: 271 PPHHPYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMG 330
Query: 955 AXFPXGPPP 981
PPP
Sbjct: 331 PPRGFMPPP 339
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRG 882
P PP A+ PLPP + P P G PPP G RG
Sbjct: 772 PPPPPSAI------PLPPRLQGGIPPPPPLGIIPPPPPPGNLLMNGINRG 815
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRG 882
P PP A+ PLPP + P P G PPP G RG
Sbjct: 772 PPPPPSAI------PLPPRLQGGIPPPPPLGIIPPPPPPGNLLMNGINRG 815
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/83 (24%), Positives = 21/83 (25%), Gaps = 2/83 (2%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGP--XXCGXXXXPPPXGXXSXXPXXRGXTPXTXFX 906
P PP A P+P P PP P C P P P
Sbjct: 90 PPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPCCQIV 149
Query: 907 XXXPPXXPKPPXXXXXAXFPXGP 975
P P P A P P
Sbjct: 150 AAAMPPPPSAPACCVAAPVPTNP 172
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/81 (27%), Positives = 22/81 (27%)
Frame = +1
Query: 733 PTPPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXX 912
P P PLPP P PP CG P P P P
Sbjct: 74 PRPSPSCCPYVPPAPLPP---PPPPASPCCGPSPVPAPCCPPPPAPAAPCCPP------- 123
Query: 913 XPPXXPKPPXXXXXAXFPXGP 975
PP P P A P P
Sbjct: 124 PPPPTPSPLVCCKQAPVPENP 144
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/68 (30%), Positives = 22/68 (32%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLGGGXXXXPQXXGPG 804
GGGG G GG G FGG G G +GGG G G
Sbjct: 53 GGGGGGGGGGGGGFGGGNGGFGGGGGGSG-GGGGGNNIGSLVGSLIGGGGGGGNYGGGGG 111
Query: 803 GXGXMXGG 780
G GG
Sbjct: 112 NQGGGGGG 119
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGG-XXXXXXVXGVXPRXXGXXEXXPLG-GGXXXXPQXXG 810
GGGG G GG G +GG G G + G GG Q G
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 242
Query: 809 PGGXGXM-XGGRGRXXXXQTAFXGGVG 732
GG G GG+G Q GG G
Sbjct: 243 GGGWGQQGGGGQGGWGGPQQQQQGGWG 269
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/87 (31%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGG-XXXXXXVXGVXPRXXGXXEXXPLG-GGXXXXPQXXG 810
GGGG G GG G +GG G G + G GG Q G
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 280
Query: 809 PGGXGXM-XGGRGRXXXXQTAFXGGVG 732
GG G GG+G Q GG G
Sbjct: 281 GGGWGQQGGGGQGGWGGPQQQQQGGWG 307
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Frame = +1
Query: 838 PPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKP-PXXXXXAXFPXGPPPP 984
PPP P G PP P P P A P PPPP
Sbjct: 535 PPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPP 584
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 192 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 362
H V C + DC NP + G C P QC C T+ +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216
Query: 363 NCVN 374
+CVN
Sbjct: 217 DCVN 220
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/63 (25%), Positives = 17/63 (26%)
Frame = +1
Query: 796 PXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPXGP 975
P P P P P G P G +P P P P P GP
Sbjct: 988 PNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGP 1047
Query: 976 PPP 984
P
Sbjct: 1048 NGP 1050
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/82 (26%), Positives = 25/82 (30%)
Frame = +1
Query: 739 PPXKAVXXXXXLPLPPXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXP 918
PP ++ P PP P GP G PPP G + F P
Sbjct: 380 PPPQSGPPGAFAP-PPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGF-GPPP 437
Query: 919 PXXPKPPXXXXXAXFPXGPPPP 984
P P P G PPP
Sbjct: 438 PGGPGAYGPPPTGFPPVGAPPP 459
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +1
Query: 796 PXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPXGP 975
P PP P PP + P G P PP P PP P P
Sbjct: 201 PPPPVPLTSNIPQAPP-----APPPPIGGIAPVNAHGAPPPP--PLPPVGAGAPPPPPPP 253
Query: 976 PPP 984
PPP
Sbjct: 254 PPP 256
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 192 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 362
H V C + DC NP + G C P QC C T+ +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216
Query: 363 NCVN 374
+CVN
Sbjct: 217 DCVN 220
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 8.9
Identities = 21/67 (31%), Positives = 22/67 (32%)
Frame = +1
Query: 784 PXIXPXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXF 963
P + PP G PPP G S RG P PP PP F
Sbjct: 1451 PPMRGMPPLGMMRGRGGPPPPRGMNSPM---RGMPPP--MRGGGPPMRGGPPMRGGPPMF 1505
Query: 964 PXGPPPP 984
GPP P
Sbjct: 1506 RGGPPGP 1512
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +1
Query: 796 PXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPXGP 975
P PP P PP + P G P PP P PP P P
Sbjct: 187 PPPPVPLTSNIPQAPP-----APPPPIGGIAPVNAHGAPPPP--PLPPVGAGAPPPPPPP 239
Query: 976 PPP 984
PPP
Sbjct: 240 PPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +1
Query: 796 PXPPGPXXCGXXXXPPPXGXXSXXPXXRGXTPXTXFXXXXPPXXPKPPXXXXXAXFPXGP 975
P PP P PP + P G P PP P PP P P
Sbjct: 187 PPPPVPLTSNIPQAPP-----APPPPIGGIAPVNAHGAPPPP--PLPPVGAGAPPPPPPP 239
Query: 976 PPP 984
PPP
Sbjct: 240 PPP 242
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/70 (28%), Positives = 22/70 (31%)
Frame = -3
Query: 983 GGGGPXGKXAXXXXFGGXGXFGGXXXXXXVXGVXPRXXGXXEXXPLGGGXXXXPQXXGPG 804
G GG G GG G + G G G P+GGG GP
Sbjct: 72 GAGGFGGAYQAAPAIGGGGSYAGAGPIGG--GFGGAQGGYAGAGPIGGGAQGGYAGAGPI 129
Query: 803 GXGXMXGGRG 774
G G G G
Sbjct: 130 GGGAQGGYAG 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,778
Number of Sequences: 27780
Number of extensions: 354106
Number of successful extensions: 1354
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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