Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L05
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    31   0.24 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.9  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
 Frame = +1

Query: 535 RLGHGXGYYDKFITNLR---LNPETAPKI--VAVAFNCQVVD--EVPTTEQDXKVXEVXF 693
           RLGHG GYYD +I+  +   L  E+   +  V +    Q++   E+P   +D K+  +  
Sbjct: 137 RLGHGKGYYDNYISKYQSWALQKESRANMFKVGICLKEQILPNREIPMDTRDQKLDALVT 196

Query: 694 P 696
           P
Sbjct: 197 P 197


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 329 RGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKD 451
           R     +PQ    R+ ++H  T +++ M KT   +S   KD
Sbjct: 584 RSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCASLSAFTKD 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,583
Number of Sequences: 5004
Number of extensions: 64646
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)