Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_L05
(962 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1025 + 23365590-23365698,23366288-23366425,23366491-233666... 54 2e-07
07_03_0560 + 19479597-19480667 30 3.2
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 30 3.2
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 29 4.2
03_02_0685 + 10401281-10401463,10403296-10403700 29 4.2
01_01_1103 - 8744873-8745724 29 4.2
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 29 7.3
>07_03_1025 +
23365590-23365698,23366288-23366425,23366491-23366649,
23366768-23366809,23366885-23366930,23367027-23367147
Length = 204
Score = 53.6 bits (123), Expect = 2e-07
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Frame = +2
Query: 137 KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 310
K LR+E+ + ALT E++ + Q + ++N SW+K S R+ Y+S E+DT+ +
Sbjct: 14 KRALRSEVRRALRALTPEQRASEDQAIQNAILNSSWFKESKRLCAYISCAQLREVDTSKV 73
Query: 311 IKHI----QARGAA--AFVPQY--AGGRMRMLHLETGDEQTMPKTKHGISQ----HGKDQ 454
+ + G A +VP+ MRML + T D+ + K I +
Sbjct: 74 LSEVLSPNSEHGHAKDLYVPRVEDKNRNMRMLKITTMDD--LVKNSMNILEPSPLDASGN 131
Query: 455 ARDDALETGG-LDLIIAPG 508
AR++ L T +DL + PG
Sbjct: 132 AREEVLSTSSPVDLFLLPG 150
>07_03_0560 + 19479597-19480667
Length = 356
Score = 29.9 bits (64), Expect = 3.2
Identities = 22/73 (30%), Positives = 23/73 (31%)
Frame = -1
Query: 935 GGGAHXXXXERGXGXPGNXXXXGGXXXGXXGXGXXXXSXGN*QXIXLKIIVXKXGGGXRG 756
GGG G G G GG G G G + V GGG G
Sbjct: 63 GGGGFGGDGGFGGGGGGGLGGGGGFGGGGGAGGGGGLGGGGGKGGGFGGGVGGGGGGEGG 122
Query: 755 XLGGXXGRXXRGG 717
LGG G GG
Sbjct: 123 GLGGGGGGGLGGG 135
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 77 SPCYLVQLGGRMSPIKPNPAKALLRNEIAAKI 172
+PCYLV S P PA+ +EIAA+I
Sbjct: 38 TPCYLVSSNSCSSRPPPEPARVYTDDEIAARI 69
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 29.5 bits (63), Expect = 4.2
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 104 GRMSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMST 283
G + KP A A L++ A A E+K+ +IV ++ SW + R+A+ +
Sbjct: 243 GGVEGAKPPDAHAFLQH--VATFAVAEKEDKELYRRIV----VSFSWRRQMPRLAITLGL 296
Query: 284 ENEID 298
E+E+D
Sbjct: 297 EDEMD 301
>03_02_0685 + 10401281-10401463,10403296-10403700
Length = 195
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 107 RMSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSS---RIALYM 277
R+ + LLRN++ A +A L ++ S +Y V WY+ R LYM
Sbjct: 26 RLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYM 85
Query: 278 STENE 292
N+
Sbjct: 86 LARNK 90
>01_01_1103 - 8744873-8745724
Length = 283
Score = 29.5 bits (63), Expect = 4.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 362 GGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDALETGGLDLIIAPG-GGVFSXPETG 538
GGR R +E+ + K + ++ HG D A A G L +AP G+ E G
Sbjct: 217 GGRKRRGRRTGREEEELEKERLFMALHGYDVAVARACHAGALHPSVAPNVSGMGRGAEDG 276
Query: 539 W 541
W
Sbjct: 277 W 277
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 28.7 bits (61), Expect = 7.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 692 SLXTYCXYXPPSXXXPXPPPXXP 760
S+ T+ Y PPS P PPP P
Sbjct: 43 SILTWHDYSPPSPPPPPPPPVAP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,769,903
Number of Sequences: 37544
Number of extensions: 539570
Number of successful extensions: 2125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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