Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L05
         (962 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)                  30   2.4  
SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)                   29   5.6  
SB_48915| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0031)        28   9.8  
SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   9.8  

>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 281  TENEIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGK 448
            T N+   AP +   Q  GAA+   +  GG   M   +TG   +M K + G  Q  K
Sbjct: 1005 TRNQTGGAPSLTRKQTGGAASLTRKQTGGAASMTRKKTGGAASMTKKQTGGRQPEK 1060


>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
          Length = 259

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 609 DSCSGF*LSSCRRGADYRTRPXSGRGXIPXXXI 707
           D CSGF   S RR   Y  R  +G+G  P   I
Sbjct: 26  DGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKI 58


>SB_38596| Best HMM Match : EGF (HMM E-Value=3.7e-06)
          Length = 605

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +2

Query: 119 IKPNPAKALLRNEIAAKIA--ALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTENE 292
           IK NP+  +++   A  +   A T  +++  ++ ++      +   S   +   +++E++
Sbjct: 81  IKFNPSPLMVKTIKAHCLIDYAATQNKQEAVAESLFHHFFELAHNISCEDVLQQVASESD 140

Query: 293 IDTAPLIKHIQARGAAAFV 349
           +DT+  I HIQ +G AA V
Sbjct: 141 LDTSAAIMHIQDQGVAARV 159


>SB_48915| Best HMM Match : Pep_M12B_propep (HMM E-Value=0.0031)
          Length = 511

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 538 LGHGXGYYDKFITNLRLNPETAPKIVA 618
           LGHG G     + +++L  ETAP I+A
Sbjct: 391 LGHGLGKNLSLLNDIQLTVETAPDIIA 417


>SB_28786| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1846

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -3

Query: 354  CGTKAAAPLAWMCLIRGAVSISFSVLM*RAIRLDDLYHEWLITFS*TICDCLFFSSFVKA 175
            C    A  +AW+  + G+ + S   +    +   ++ ++WLI+   +  + +FF   VK 
Sbjct: 1106 CLPAGATWIAWLICLSGSAASSVFTVFYSLVWGAEISNQWLISTMVSFVEDIFFIQPVKL 1165

Query: 174  AILAAI 157
             IL+ +
Sbjct: 1166 IILSCL 1171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,322,276
Number of Sequences: 59808
Number of extensions: 542292
Number of successful extensions: 1604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)