Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L05
         (962 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical ...    82   5e-16
U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical p...    31   1.6  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    30   2.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    30   2.8  
Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    29   6.5  

>AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical
           protein Y106G6E.4 protein.
          Length = 206

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
 Frame = +2

Query: 110 MSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTEN 289
           MS IK    K+ LR  +   +  ++ EE +RQ++ V+EK+I   W++ S R+++Y+ST  
Sbjct: 1   MSAIKE--VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG 58

Query: 290 EIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLETGDE---QTMPKTKHGISQHGKDQAR 460
           EI T  +I+     G   F+PQ+  G   M  +   D+     +P T  GI Q       
Sbjct: 59  EIQTDSIIQKALEMGKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEPKWKW 118

Query: 461 DDALETGGLDLIIAPG 508
               ETG LDLI+APG
Sbjct: 119 QSYHETGPLDLILAPG 134



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 508 GWRFLXSGDRLGHGXGYYDKFI-TNLRLNPETAPKIVAVAFNCQVVDEVPTTEQDXKVXE 684
           G  F   G R GHG GYYD+F  T+ +  PE +PK + +A   Q++  +P +E D ++ E
Sbjct: 134 GVAFSPYGLRCGHGKGYYDRFFSTHHKHFPENSPKKIGLALREQIIGTIPISETDVELDE 193

Query: 685 VXF 693
           V +
Sbjct: 194 VIY 196


>U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical
           protein F26A1.13 protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 84  VILCN*EAE*VQ*NQIQPKPCYVTKLPLKSPP*RM----KRKKDNRKLFMKRLSTTHGTN 251
           ++L N E E     +++PKP +  K+     P R+    K KK+    F+K+ S  H   
Sbjct: 247 ILLSNGEVENTYAVKLKPKPTWSKKVASSPSPLRLSLPKKSKKEEENHFLKKRSGRHSQL 306

Query: 252 HQVVLLS 272
            ++ LL+
Sbjct: 307 EEIQLLA 313


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 519  KTPPPGAMIR-SNPPVSRASSLAWSFPC*DIPCLVFGMVCSSPVSKCNILMRPPAYCGTK 343
            K  P   ++R SN   ++     ++F C D  C++ G  C S     +     P YC T+
Sbjct: 2773 KDYPTQCVLRGSNSEPAKECLPPYNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTR 2832

Query: 342  AAAPLAWMCLIRGAV 298
            +      +C  R  +
Sbjct: 2833 SCPEDYNLCTNRRCI 2847


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 519  KTPPPGAMIR-SNPPVSRASSLAWSFPC*DIPCLVFGMVCSSPVSKCNILMRPPAYCGTK 343
            K  P   ++R SN   ++     ++F C D  C++ G  C S     +     P YC T+
Sbjct: 2773 KDYPTQCVLRGSNSEPAKECLPPYNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTR 2832

Query: 342  AAAPLAWMCLIRGAV 298
            +      +C  R  +
Sbjct: 2833 SCPEDYNLCTNRRCI 2847


>Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical
           protein C28D4.2 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 86  YLVQLGGRMSPIKPNPAKALLRNEIAAKIAALTNE 190
           +LV+L   ++PI+  P KALLR    + I  L +E
Sbjct: 126 FLVELPAHLTPIQMEPEKALLRVHCQSDIDQLLSE 160


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 362 GGRMRMLHLETGDEQTMPKTKHGISQHGKDQARDDALETGGLDLIIAPGGGVFSXPE 532
           GGR R    ++G ++T  ++      HGK    D   E  G    IAP G   + PE
Sbjct: 174 GGRGRQFDRQSGSDRTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTEPE 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,735
Number of Sequences: 27780
Number of extensions: 409828
Number of successful extensions: 1308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)