Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L05
         (962 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase (...    39   0.004
At2g03500.1 68415.m00309 myb family transcription factor contain...    31   1.5  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    30   2.6  
At1g21210.1 68414.m02651 wall-associated kinase 4                      30   2.6  

>At5g13050.1 68418.m01496 5-formyltetrahydrofolate cyclo-ligase
           (5-FCL) nearly identical to gi:22087553
          Length = 277

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 14/138 (10%)
 Frame = +2

Query: 137 KALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTE--NEIDTAPL 310
           K ++R+ +   + A+    + +Q + + + V+   W+KS   +  Y+S +  NE+DT+ +
Sbjct: 60  KRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWFKSCKGLCAYISCKSLNEVDTSKI 119

Query: 311 IKHIQARGAA-----AFVP--QYAGGRMRMLHLETGDEQTMPKTK----HGISQHGKDQA 457
           +  I     +      +VP  +     MRMLH+   ++             +   G D  
Sbjct: 120 LSEILQHPDSNTQKKLYVPWVEDKNSNMRMLHISHMEDLVANSMNILEPAPVDAQGND-- 177

Query: 458 RDDALETG-GLDLIIAPG 508
           R+D L+    +DL I PG
Sbjct: 178 REDVLQADEPIDLFILPG 195



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +1

Query: 508 GWRFLXSGDRLGHGXGYYDKFITNLRLNPETA----PKIVAVAFNCQVVDE--VPTTEQD 669
           G  F   G RLG G GYYD F+   +   +      P +VA++++ Q++++  +P T  D
Sbjct: 195 GLAFDRCGRRLGRGGGYYDTFLKRYQDRAKEKGWRYPLMVALSYSPQILEDGSIPVTPND 254

Query: 670 XKVXEVXFPXXXLXLXP 720
             +  +  P   + + P
Sbjct: 255 VLIDALVTPSGVVPITP 271


>At2g03500.1 68415.m00309 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 432

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 284 ENEIDTAPLIKHIQAR---GAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKDQ 454
           ++EI+++P + H  A+   G+ AF+P      +  L L T  ++  P  +H   Q G D+
Sbjct: 142 KDEINSSPKLGHFDAKQRNGSGAFLPFSKEQSLPELALSTEVKRVSPTNEHTNGQDGNDE 201

Query: 455 A 457
           +
Sbjct: 202 S 202


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/76 (27%), Positives = 22/76 (28%)
 Frame = +2

Query: 719 PPSXXXPXPPPXXPGXRPXFFXQ*SLXKXFVNSPXXXXXXPXXXXXXPXPXXXXXSXGXR 898
           PP    P PPP  P   P       L     +SP      P      P P     S G  
Sbjct: 167 PPPYPSPLPPPPSPSPTPG--PDSPLPSPGPDSPLPLPGPPPSPSPTPGPDSPLPSPGPD 224

Query: 899 XPFPSGXHGPXXPXTP 946
            P P     P    TP
Sbjct: 225 SPLPLPGPPPSSSPTP 240


>At1g21210.1 68414.m02651 wall-associated kinase 4
          Length = 738

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 305 EQCLSHFRCSCREQYDLMICT 243
           E  L HFRC+CR +Y+L   T
Sbjct: 301 ENKLGHFRCNCRSRYELNTTT 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,786
Number of Sequences: 28952
Number of extensions: 396515
Number of successful extensions: 1451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)