Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L03
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   1.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   4.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   8.5  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   8.5  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 403 ISVLTHCTTIIYP*GSVSLATLXEKLPTQQALQAVQD--FLACGVENNLLTEDYHVVGHQ 576
           I+    C+ +IYP G+ +L+T           +AV +  F+AC      +  DYH  GH 
Sbjct: 206 IAARNGCSVMIYP-GAFNLSTGPLHWELLARARAVDNEMFVACCAPARDMNADYHSWGHS 264

Query: 577 QLIN 588
            +++
Sbjct: 265 TVVD 268


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 258 NDCFTDEECLLSVNSLRQHHMRLAGFKDLGYSFV 359
           N  FTDE+  + V  LRQ ++ L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 25/95 (26%), Positives = 41/95 (43%)
 Frame = -1

Query: 367 PPATNE*PKSLNPARRI*CCRREFTLSKHSSSVKQSLDTVCCITTKSIGLFRGCLRRDSV 188
           P      P+  NP        +EF L K+  S+ Q    V  + T+S+G+    +     
Sbjct: 424 PSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSILQKWPAVKSLPTESVGI-DVVMEPKLQ 482

Query: 187 PLHSVMGISPHSDAAFRVPKLTKNTNNNRDGATNI 83
           P  SV    P  D    +P + ++ ++NRD  T+I
Sbjct: 483 P--SVKEKKPTKDLQSPLPSVEED-SSNRDKKTDI 514


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +3

Query: 228 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQHHMR-LAGFKDLGYSFVAG 365
           +L ++ + + NDCFT  E   CL    LS N L +   +    F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 117 TPTIIETVQPTSLQPVLD 64
           +P ++ETVQ T +QP +D
Sbjct: 246 SPKLLETVQSTIIQPTID 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,235
Number of Sequences: 5004
Number of extensions: 59959
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)