Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L03
         (907 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   5.2  
SB_32751| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)            29   6.8  

>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 295  TLSKHSSSVKQ--SLDTVCCITTKSIGLFRGCLRRDSVPLHSVMGISP 158
            T+S   SS+ Q  ++D++   + + IG  R C R  + PL S+ GISP
Sbjct: 1245 TISPIGSSLAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISP 1292


>SB_32751| Best HMM Match : Pentapeptide_2 (HMM E-Value=1.8)
          Length = 127

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 47  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 80



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 52  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 85



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 57  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 90



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 62  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 95



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 67  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 100



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 72  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 105



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 77  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 110



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 82  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 115



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 87  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 120



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 330 GFKDLGYSFVAGGNGKIYEGAGWNHIGAHTLHYNN 434
           G+ D+GY+ + G N   Y   G+N IG + + YN+
Sbjct: 92  GYNDIGYNDI-GYNDIGYNDIGYNDIGYNDIGYND 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,886,784
Number of Sequences: 59808
Number of extensions: 468632
Number of successful extensions: 1118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)