Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_L03
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24370.1 68415.m02912 protein kinase family protein contains ...    32   0.45 
At3g23740.1 68416.m02985 expressed protein                             29   4.2  
At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    28   7.4  
At2g18500.1 68415.m02156 ovate family protein 69% similar to ova...    28   9.8  

>At2g24370.1 68415.m02912 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 816

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 159 RIRTLHSGFRNSPRTPTIIETVQPTSLQP--VLDLSNANQILREXRCSES 16
           +I+T+ S  R++P T  +  +VQP SL+P   +  ++AN +  + R  ES
Sbjct: 172 KIQTMRSASRSAPMTAPLRSSVQPPSLKPPQPMPSTSANSLRADRRSFES 221


>At3g23740.1 68416.m02985 expressed protein 
          Length = 542

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = -1

Query: 271 VKQSLDTVCCITTKSIGLFRGCLRRDSVPLHSVMGISPHSDAAFRVPKLTK 119
           V QS+D+V      S G F  C  RD+ PL SV+  +P+ +AAF   KL K
Sbjct: 177 VSQSMDSV--YDKDSTGSF--C--RDTSPLKSVIASTPNKNAAFSRGKLFK 221


>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 333 FKDLGYS-FVAGGNGKIYEGAGW-NHIGAHTLHYNN 434
           F   GY  F  GGN  IY+G G  N+IG  ++ ++N
Sbjct: 232 FSGGGYGIFSDGGNTSIYDGGGMINNIGTDSVDHDN 267


>At2g18500.1 68415.m02156 ovate family protein 69% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 315

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 282 CLLSVNSLRQHHMRLAGFKDLGYSFVAGGNG 374
           C LS+N+ R H   +  F ++  +  +GG+G
Sbjct: 266 CFLSLNAKRHHRAIVRAFSEIWVALFSGGSG 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,023
Number of Sequences: 28952
Number of extensions: 329768
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)