Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K24
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.019
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.31 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   8.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   8.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 29/102 (28%), Positives = 34/102 (33%), Gaps = 2/102 (1%)
 Frame = +1

Query: 532 RXXXTTGXXPTPXAXGXXXPNXPPPPXRXFFXSFSXPXXPPLSPXXFPXHNQXAXTPLXP 711
           R   +TG  P P +      N P PP        S P  PPL       +     TP  P
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPA--IPGRSAPALPPLG------NASRTSTPPVP 418

Query: 712 PPPXTXFTXXXXLPRLTPSPHPLXXRGAXPGP--XXXXPPXP 831
            PP    +    LP   P   P+    A P P      PP P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
 Frame = +1

Query: 598 PPPPXRXFFXSFSXPXXPPLSPXXFPXHNQXAXTPLXP-----PPPXTXFTXXXXLPRLT 762
           PP P        + P  PP +P   P     A  PL P     PP          LP   
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPM-GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473

Query: 763 PSPHP 777
           P+P P
Sbjct: 474 PAPPP 478


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +2

Query: 650  RPFXHXPSHXTTXXXPPPXXXPPPXPXSPXXXSSPAXHLPPTPSXXXAP 796
            RP    P   +    PPP    PP P +P   + P    PP      AP
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 695  PPPXXXPPPXPXSPXXXSSPAXHLPPTPSXXXAPXP 802
            PPP   PPP    P     P+   PP P+      P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 695 PPPXXXPPPXPXSPXXXSS 751
           PPP   PPP P  P   SS
Sbjct: 806 PPPAPLPPPAPPLPTAMSS 824


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 559 PTPXAXGXXXPNXPPPPXRXFFXSFSXPXXPPLSPXXF 672
           PTP   G   P  PPP     +   + P  P +SP  F
Sbjct: 347 PTPQVQGSRPP-PPPPMPAPIYNVPNVPTVPTVSPNPF 383


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = +2

Query: 695 PPPXXXPPPXPXSPXXXSSPAXHLP---PTPSXXXAP 796
           PP    PPP P S     S A  +P   P P+   AP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 713 PPPXPXSPXXXSSPAXHLPPTP 778
           PPP P +    S+PA   PP P
Sbjct: 908 PPPPPTASMTASAPAIASPPPP 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,587
Number of Sequences: 5004
Number of extensions: 16246
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)