Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K23
         (1094 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   1.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    24   2.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   5.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.5  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
            neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +1

Query: 916  PPPXXLPXPXPRXPXPRARXXPAXXPPPXPXGPPXXXAPPA 1038
            PP   +P P    P    +   +   PP P  PP     P+
Sbjct: 72   PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPS 112


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
            protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
 Frame = +3

Query: 921  PPXPPGXXPXXPXPAGPPXPRXXX--PPXPPXPPXPXRP 1031
            P   P      P PA PP        PP P  PP P  P
Sbjct: 149  PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B protein.
          Length = 279

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = +3

Query: 1002 PPXP-PXPXRPPRXXPXPPAP 1061
            PP P P P +  R  P PP P
Sbjct: 250  PPTPKPRPTKVSRRKPRPPRP 270


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
            transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
 Frame = +1

Query: 991  PPPXPXGPPXXXAPPAXXPXP--PP 1059
            PP    GPP    PP   P P  PP
Sbjct: 61   PPHHYGGPPSGGQPPQGMPYPRFPP 85


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/39 (28%), Positives = 12/39 (30%)
 Frame = +3

Query: 966  GPPXPRXXXPPXPPXPPXPXRPPRXXPXPPAPRXXPPXP 1082
            G   P     P PP        P   P P +PR     P
Sbjct: 35   GSMTPNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDP 73



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 1064 AGGGGXGXXAGGAXXXGGP 1008
            A GGG G  +G     GGP
Sbjct: 522  AKGGGGGSGSGNNQPPGGP 540



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 934 GGXGGGGAGXXXGPG 890
           GG GG G+G    PG
Sbjct: 524 GGGGGSGSGNNQPPG 538


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 912 APPPPXPP 935
           APPPP PP
Sbjct: 730 APPPPPPP 737


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 915 PPPPXPPGXXPXXPXPAGP 971
           PPPP P    P  P    P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 915 PPPPXPPGXXPXXPXPAGP 971
           PPPP P    P  P    P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.149    0.554 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,266
Number of Sequences: 336
Number of extensions: 2685
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 31547682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)