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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K17
         (963 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   3.6  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       29   4.2  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   4.2  
SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8)           29   7.4  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 28   9.8  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   9.8  

>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
 Frame = +2

Query: 245 TGNDKNVLSAIG-----SADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGV 409
           TGN  +V+S  G     +A+F+D   + A S   + + ++  G+  T   I G      +
Sbjct: 438 TGNGMDVISLNGPIGRFTAEFSDVLYVDAGSNYDSPNTLSFGGIPKTHAHIKGAYFN-AI 496

Query: 410 AGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTL-GGGSGLHVQTEGGR 562
            GK+  FH +N +L    F    +   +  +P  +T+   G G  V+ + G+
Sbjct: 497 DGKIGFFHGHNKEL--HKFGTAKAIRMVQGSPFADTIVMDGEGFRVEQQNGK 546


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 413 GKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNF----NTLGGGSGLHVQTEGGRIVERGA 580
           GK ++    NHD    A A+    + +   P++    N   GG+GL +QTE  R + R A
Sbjct: 36  GKKSITRVRNHDELCAALALVIGMAHLTKDPDYAKLYNPKDGGAGLPLQTERARALHRDA 95


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 24.6 bits (51), Expect(2) = 3.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -1

Query: 414 PATPSCSPKPGMRVPVRLSPCPFTLSRA 331
           P  P C+P P M     L P P   S A
Sbjct: 769 PVPPPCAPIPPMPCSAPLPPAPAPFSAA 796



 Score = 23.4 bits (48), Expect(2) = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 576 PRSTMRPPSV*TCSPLPPP 520
           P+ T +PP+    +P+PPP
Sbjct: 755 PKVTPKPPAPPQFAPVPPP 773


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 504 GALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 355
           G + M + + LIA   A+++     N L +PA  S  PKP   V V+ SP
Sbjct: 395 GDMDMQISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPA-PVQVQASP 443


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 158 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 307
           HVP +     G +  NS     T G+ + +PL  ++K V+  +G    ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577


>SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8)
          Length = 206

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 414 PATPSCSP--KPGMRVPVRLSPCPFTLSRASPA-EAALSLWRSLKSADPM 274
           P TPSCSP  +  + +PVRL      LS  +P  EA + L  S+K+  P+
Sbjct: 10  PLTPSCSPLERDVLALPVRLG----GLSMTNPCLEADIELSSSVKATAPL 55


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 19/72 (26%), Positives = 27/72 (37%)
 Frame = -1

Query: 357 PCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACL 178
           P P  L R  PA   L     L+   P   S    LP+         +P+   ++ P   
Sbjct: 619 PTPLPLERPVPAVTRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLERPVPA 678

Query: 177 RARVGTCLPLAK 142
             R+ T LPL +
Sbjct: 679 VTRLPTDLPLER 690


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = -1

Query: 429 NKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSL 250
           + + + ATPS SP P   VP  L       + ++P+ AA S+   +       L T    
Sbjct: 218 SSVVVAATPSTSPVPATFVP-SLPTVASASTLSAPSVAASSIATPVNKTVVATLKTL--A 274

Query: 249 PVRGTFRAAPEVPSEFTVKLPACLRAR 169
           PV    R     PS  +++ P  +  R
Sbjct: 275 PVVVVSRGVSISPSSSSIRTPVSIAVR 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,166,746
Number of Sequences: 59808
Number of extensions: 387388
Number of successful extensions: 1075
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2836293838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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