BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP01_F_K17 (963 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8 SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 3.6 SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) 29 4.2 SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) 29 4.2 SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8) 29 7.4 SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 28 9.8 SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 9.8 >SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 830 Score = 30.7 bits (66), Expect = 1.8 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Frame = +2 Query: 245 TGNDKNVLSAIG-----SADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGV 409 TGN +V+S G +A+F+D + A S + + ++ G+ T I G + Sbjct: 438 TGNGMDVISLNGPIGRFTAEFSDVLYVDAGSNYDSPNTLSFGGIPKTHAHIKGAYFN-AI 496 Query: 410 AGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTL-GGGSGLHVQTEGGR 562 GK+ FH +N +L F + + +P +T+ G G V+ + G+ Sbjct: 497 DGKIGFFHGHNKEL--HKFGTAKAIRMVQGSPFADTIVMDGEGFRVEQQNGK 546 >SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2337 Score = 30.3 bits (65), Expect = 2.4 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Frame = +2 Query: 413 GKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNF----NTLGGGSGLHVQTEGGRIVERGA 580 GK ++ NHD A A+ + + P++ N GG+GL +QTE R + R A Sbjct: 36 GKKSITRVRNHDELCAALALVIGMAHLTKDPDYAKLYNPKDGGAGLPLQTERARALHRDA 95 >SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1000 Score = 24.6 bits (51), Expect(2) = 3.6 Identities = 11/28 (39%), Positives = 12/28 (42%) Frame = -1 Query: 414 PATPSCSPKPGMRVPVRLSPCPFTLSRA 331 P P C+P P M L P P S A Sbjct: 769 PVPPPCAPIPPMPCSAPLPPAPAPFSAA 796 Score = 23.4 bits (48), Expect(2) = 3.6 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -1 Query: 576 PRSTMRPPSV*TCSPLPPP 520 P+ T +PP+ +P+PPP Sbjct: 755 PKVTPKPPAPPQFAPVPPP 773 >SB_36998| Best HMM Match : TUDOR (HMM E-Value=0) Length = 2538 Score = 29.5 bits (63), Expect = 4.2 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -1 Query: 504 GALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 355 G + M + + LIA A+++ N L +PA S PKP V V+ SP Sbjct: 395 GDMDMQISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPA-PVQVQASP 443 >SB_6115| Best HMM Match : efhand (HMM E-Value=0.22) Length = 822 Score = 29.5 bits (63), Expect = 4.2 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +2 Query: 158 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 307 HVP + G + NS T G+ + +PL ++K V+ +G ND HK Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577 >SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8) Length = 206 Score = 28.7 bits (61), Expect = 7.4 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%) Frame = -1 Query: 414 PATPSCSP--KPGMRVPVRLSPCPFTLSRASPA-EAALSLWRSLKSADPM 274 P TPSCSP + + +PVRL LS +P EA + L S+K+ P+ Sbjct: 10 PLTPSCSPLERDVLALPVRLG----GLSMTNPCLEADIELSSSVKATAPL 55 >SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) Length = 1604 Score = 28.3 bits (60), Expect = 9.8 Identities = 19/72 (26%), Positives = 27/72 (37%) Frame = -1 Query: 357 PCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACL 178 P P L R PA L L+ P S LP+ +P+ ++ P Sbjct: 619 PTPLPLERPVPAVTRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLERPVPA 678 Query: 177 RARVGTCLPLAK 142 R+ T LPL + Sbjct: 679 VTRLPTDLPLER 690 >SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) Length = 1079 Score = 28.3 bits (60), Expect = 9.8 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = -1 Query: 429 NKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSL 250 + + + ATPS SP P VP L + ++P+ AA S+ + L T Sbjct: 218 SSVVVAATPSTSPVPATFVP-SLPTVASASTLSAPSVAASSIATPVNKTVVATLKTL--A 274 Query: 249 PVRGTFRAAPEVPSEFTVKLPACLRAR 169 PV R PS +++ P + R Sbjct: 275 PVVVVSRGVSISPSSSSIRTPVSIAVR 301 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,166,746 Number of Sequences: 59808 Number of extensions: 387388 Number of successful extensions: 1075 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 949 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1070 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2836293838 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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