Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K17
         (963 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   5.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   5.4  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 410 AGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTL 520
           +G++N+  +++HD S + +A  + P  I + PN + L
Sbjct: 68  SGQLNII-SSDHDDSDEEYAANSQPPRITSVPNTSRL 103


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 320 SAGLALDNVNGHGLSLTGTRIPGFGEQL 403
           ++ LA+  +N H   + GTR+PG    L
Sbjct: 289 ASALAVVTLNLHHRGVRGTRVPGIVRSL 316


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 489 ALGEFLIANALALRSWL 439
           ALGEF++   L LRS L
Sbjct: 276 ALGEFVVVKVLDLRSQL 292


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 452 SAKAFAIRNSPS-AIPNAPNFNTLGGGSGLHVQTEGGRIV 568
           +A A A+++S   + P++     +GG +GLH  T   R +
Sbjct: 379 AAVAAAVQSSSIVSSPDSARHQRIGGCNGLHTTTAHNRFL 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,596
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)