Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K17
         (963 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    29   4.6  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    29   4.6  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    28   8.0  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    28   8.0  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    28   8.0  

>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 437 NNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGSG 535
           NN+++     ++  +  + P AP F+  GGG G
Sbjct: 355 NNYEMRGNKISVTMAEKSAPRAPTFDQRGGGRG 387


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 437 NNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGSG 535
           NN+++     ++  +  + P AP F+  GGG G
Sbjct: 355 NNYEMRGNKISVTMAEKSAPRAPTFDQRGGGRG 387


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 288 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 151
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 288 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 151
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 288 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 151
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,948
Number of Sequences: 28952
Number of extensions: 270651
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)