Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_K15
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0672 - 10325935-10326150,10326308-10326400,10326568-103267... 78 8e-15
01_06_1209 + 35427160-35427318,35427436-35427501,35427737-354278... 65 8e-11
03_02_0673 - 10328994-10329281 43 4e-04
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 34 0.18
05_01_0258 + 1984666-1984878,1985019-1985852 29 3.9
08_02_0360 + 16196712-16197560,16198126-16198875 28 9.0
03_02_0947 + 12640438-12640824 28 9.0
>03_02_0672 -
10325935-10326150,10326308-10326400,10326568-10326708,
10326828-10326893,10327099-10327359
Length = 258
Score = 78.2 bits (184), Expect = 8e-15
Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 7/212 (3%)
Frame = +3
Query: 228 LRLVCFLMLLCYVVAKKKTEDHKVXIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVK 404
L L L+L V KK KV +A+YYESLCP S F+ LA V+RD V +
Sbjct: 11 LLLAAILLLAAGAVEGKK--GGKVDVALYYESLCPYSAMFVVGSLAKVFRDGLLDAVDLS 68
Query: 405 MVPYGKSTHDKVDGKWSFICHHGADECYGNKVQACVLKDRNLQDTEKMEIVICLMNQTXP 584
+VPYG + DGK S HG++EC+ N V+AC + D + C+
Sbjct: 69 LVPYGNAR--VKDGKISCQVEHGSEECFLNTVEACAI-DAWPDLRVHFRFIYCV-----E 120
Query: 585 EQVFGHVLNSXGPXCRSRIN*KDAP-----SSEPGDXLLASYGDKTDAVMRPLAFVPTVI 749
+ V H C ++N P E G L YG +TDA+ P +VP V+
Sbjct: 121 DLVVNHKQREW-ESCFGKLNLDPKPVTDCYKGERGHQLSLKYGRQTDALQPPHKYVPWVV 179
Query: 750 IN-QXYDQDVXTPAFENXTXLCAXLHPXPSIC 842
++ Q +D FE HP P +C
Sbjct: 180 VDGQPLYEDYEN--FEAYICKAYKGHP-PKVC 208
>01_06_1209 +
35427160-35427318,35427436-35427501,35427737-35427877,
35428342-35428434,35428530-35428646,35428890-35429054
Length = 246
Score = 64.9 bits (151), Expect = 8e-11
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)
Frame = +3
Query: 303 IAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKMVPYGKSTHDKVDGKWSFICHHGAD 479
++VYYE+LCP F+ LA ++RD +V +++VP+G + +V S C HG +
Sbjct: 1 MSVYYETLCPFCSGFVVNDLARIFRDGLSPVVDLRLVPFG---NGRVSPDGSITCQHGEE 57
Query: 480 ECYGNKVQACVLKDRNLQDTEK-MEIVICL--MNQTXPEQVFGHVLNSXGPXCRSRIN*K 650
EC N ++ACV+ R D E+ + C+ + T + G + +
Sbjct: 58 ECQLNAIEACVI--RLWPDAEQHFPFINCIEHLALTQKWNAWQSCFQETGLASQPVM--- 112
Query: 651 DAPSSEPGDXLLASYGDKTDAVMRPLAFVPTVIIN 755
D +S G L Y +T+A+ P FVP V +N
Sbjct: 113 DCYNSGYGTQLQLQYAAETNALQPPHQFVPWVTVN 147
>03_02_0673 - 10328994-10329281
Length = 95
Score = 42.7 bits (96), Expect = 4e-04
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +3
Query: 294 KVXIAVYYESLCPDSKKFITTQLAPVWRD-FRGLVKVKMVPYGKS 425
KV +A+YYE+LCP +FI LA ++ D V +++VPYG +
Sbjct: 38 KVPLALYYETLCPYCSRFIVNHLAGIFEDGIVDAVDLRLVPYGNA 82
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Frame = +3
Query: 312 YYESLCPDSKKFITTQLAPV--------WRDFRGLVKVKMVPYGKSTHDKVDGKWSFIC- 464
+YE CP ++ + + P W R +V +P+ H+K D W
Sbjct: 116 HYERHCPPPERRLNCLIPPPHGYKVPIKWPKSRDIVWKANIPHTHLAHEKSDQNWMIDAG 175
Query: 465 -----HHGADECYGNKVQACVLKDRNLQDTEKMEIVI 560
HHGAD+ N KD N+ + + V+
Sbjct: 176 GGTHFHHGADKYIANIANMLKFKDNNINNEGMLRTVL 212
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 228 LRLVCFLMLLCYVVAKKKTEDHKVXIAVYYESLCPDSKKFITTQLAPVWRDFRG 389
++LVCF++++ A + YYE C D +K + + + +D RG
Sbjct: 2 VKLVCFVVVVFMAAAAAMAGADRELKVGYYEKTCKDVEKIVNSIVVNSIKDNRG 55
>08_02_0360 + 16196712-16197560,16198126-16198875
Length = 532
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 390 VL*SPSRREPVASL*TSCCQDKGIRNRPLFXPYGLRFSSSPRH 262
VL SP EP+ L S + G+R P P + S SPRH
Sbjct: 288 VLGSPENLEPIGELPGSAKPEPGVRPNP-SRPRSVARSLSPRH 329
>03_02_0947 + 12640438-12640824
Length = 128
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 609 NSXGPXCRSRIN*KDAPSSEPGDXLLASYGDKTDAVMRPLAFVPTVIIN 755
NS P CR+ + + EPG A+ GDK DAV + VP V+++
Sbjct: 80 NSTCPFCRAAV-----VAGEPGGAAAAA-GDKGDAVAVAVVGVPDVVVH 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,522,951
Number of Sequences: 37544
Number of extensions: 446923
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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