Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K15
         (914 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  65   9e-11
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 31   1.7  
SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)                      29   4.0  

>SB_54785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
 Frame = +3

Query: 297 VXIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKWSFICHHGA 476
           V I++YYES+C   +  I  QL P ++    ++ + +VPYG +   +   KW F C HG 
Sbjct: 27  VAISLYYESMCGGCRDMIRDQLYPTFQKVGSIMDITLVPYGNAQEYRYGNKWVFNCQHGQ 86

Query: 477 DECYGNKVQACVLKD-RNLQDTEKMEIVICLMNQTXPEQVFGHVLNSXGPXCRSRIN*KD 653
            EC GN ++ C +   +N+  +     + C       + +  +  +S    C  ++    
Sbjct: 87  GECEGNIIEVCAINVLKNI--SAYFPFIHCF-----EQFISSYNPSSTAQYCAKQLGIDY 139

Query: 654 AP-----SSEPGDXLLASYGDKTDAVMRPLAFVPTVIINQXYDQDVXTPAFENXTXL 809
           AP     S   G+ L    G +TDA++    +VP V +N  + +++   A  N   L
Sbjct: 140 APIEKCASGLQGNELEHEMGVETDALVPRHNYVPWVTLNGEHTEEIQNQATFNMLGL 196


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 64.9 bits (151), Expect = 9e-11
 Identities = 28/85 (32%), Positives = 45/85 (52%)
 Frame = +3

Query: 273 KKKTEDHKVXIAVYYESLCPDSKKFITTQLAPVWRDFRGLVKVKMVPYGKSTHDKVDGKW 452
           K+  +  KV +AVYY S  P+ ++F+  QL P       ++ + MVP+G     K    +
Sbjct: 20  KQTKKAEKVKLAVYYNSKNPEFRRFMVAQLYPTSNKIPNILDISMVPFGDGKEIKAKSGF 79

Query: 453 SFICHHGADECYGNKVQACVLKDRN 527
            + C +GA+EC  N +QAC +   N
Sbjct: 80  QYYCTNGAEECLENLIQACAVATEN 104


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 484 HSSAPWWQMNDHFPSTLS 431
           HS+  +W  NDHFPS+LS
Sbjct: 585 HSNHRYWYYNDHFPSSLS 602


>SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)
          Length = 471

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 437 LVVRALPIRDHFDFDKSSEVPPDGSQLRRYKLLAVRTKGF 318
           + ++A+  R HFDF     + PD S +R+  L  +R  G+
Sbjct: 209 IAIKAMKWRSHFDFLSDKSIVPD-SFMRKILLKGIRRHGY 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,862,415
Number of Sequences: 59808
Number of extensions: 523251
Number of successful extensions: 1126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)