Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K14
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.0  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    28   8.0  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = +1

Query: 748 PXFXPIXPXXPHTXX-NPXXDPXXXCMXXXPPIPGXXXAAXXPPXXXGXXPPP 903
           P   P+ P  P T    P   P        PP P        PP   G  PPP
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
 Frame = +1

Query: 748 PXFXPIXPXXPHTXX-NPXXDPXXXCMXXXPPIPGXXXAAXXPPXXXGXXPPP 903
           P   P+ P  P T    P   P        PP P        PP   G  PPP
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = -1

Query: 282 LRLQKMFIHILIK*GDVSLLELYSTS----ERLFGLSDIFTTLQDSHLKFKIWKKY-HQK 118
           LRL K  IH  I  G +S+  L++        ++   D+   + D HL FK WK   H+ 
Sbjct: 59  LRLSKNGIHFKI--GGISISGLHAGKIMFRNVIYDNGDMTIKVNDGHLLFKYWKSVEHRH 116

Query: 117 NRTFFSHSNRVNLI 76
                  ++R++L+
Sbjct: 117 LNLSTKRASRLHLV 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,360
Number of Sequences: 27780
Number of extensions: 242788
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)