Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K14
         (909 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    33   0.26 
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    31   1.4  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   3.2  

>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/65 (24%), Positives = 20/65 (30%)
 Frame = +1

Query: 709 PXPPSLQXXXXXXPXFXPIXPXXPHTXXNPXXDPXXXCMXXXPPIPGXXXAAXXPPXXXG 888
           P PP +       P + P  P   H+   P   P        PP+         PP    
Sbjct: 519 PPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVH 578

Query: 889 XXPPP 903
             PPP
Sbjct: 579 SPPPP 583



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 3/80 (3%)
 Frame = +1

Query: 673 VFQHXP*XXHFXPXP---PSLQXXXXXXPXFXPIXPXXPHTXXNPXXDPXXXCMXXXPPI 843
           V+   P   H  P P   P         P + P  P   H+   P   P        PP+
Sbjct: 584 VYSPPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPPVHSPPPPVFSPPPPVHSPPPPV 643

Query: 844 PGXXXAAXXPPXXXGXXPPP 903
                    PP      PPP
Sbjct: 644 YSPPPPVYSPPPPPVKSPPP 663


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +1

Query: 709 PXPPSLQXXXXXXPXFXPIXPXXPHTXXNPXXDPXXXCMXXXPPIPGXXXAAXXPPXXXG 888
           P PP+++      P   P  P  P+T   P   P    +   PP      A   PP    
Sbjct: 114 PPPPTVKPPPPPTPYTPP--PPTPYTPPPPTVKPPPPPVVTPPPPTPTPEAPCPPPPPTP 171

Query: 889 XXPPP 903
             PPP
Sbjct: 172 YPPPP 176


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/74 (25%), Positives = 22/74 (29%)
 Frame = +1

Query: 682 HXP*XXHFXPXPPSLQXXXXXXPXFXPIXPXXPHTXXNPXXDPXXXCMXXXPPIPGXXXA 861
           H P    F P PP         P   P     PH+   P   P        PP P    +
Sbjct: 543 HSPPPPQFSPPPPEPYYYSSPPP---PHSSPPPHSPPPPHSPPPPIYPYLSPPPPPTPVS 599

Query: 862 AXXPPXXXGXXPPP 903
           +  P       PPP
Sbjct: 600 SPPPTPVYSPPPPP 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,100,267
Number of Sequences: 28952
Number of extensions: 214861
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)