Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K11
         (950 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.78 
SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)          29   5.5  
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  29   7.3  
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)                      29   7.3  
SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             28   9.6  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   9.6  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 31.9 bits (69), Expect = 0.78
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 225 TRMGGGKVFGTLGQNDDGLFGKAGYNREISNDDRGQLTGQAYG 353
           T+ G G  FGT      GLFG AG N        G +TG  +G
Sbjct: 47  TQTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFG 89


>SB_47271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 811

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 105 FIATVLVCVNAEVYRSSDYEKEYPIRGLFSK 197
           F   + VC+ A V   +DY+KE   RGL SK
Sbjct: 145 FAILIAVCIVALVTAVNDYQKEQQFRGLQSK 175


>SB_35867| Best HMM Match : Fibrinogen_C (HMM E-Value=6.5e-13)
          Length = 445

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 309 SLCCNRLYRIVHRRSVPKCRRPSLLPFSCPT*RH 208
           S+ CNR+   V+ R    CR P+L     PT +H
Sbjct: 390 SMSCNRVLYFVYSRLTKGCREPALRVRDKPTCKH 423


>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 133 TQKYTGLLIMKKNTPSEAYFQSDTP---VTSRGTREWEEGRSS 252
           TQ+   +   KK+   +AYF+S TP    + R    W+E  +S
Sbjct: 187 TQQNASISEQKKSKKKDAYFRSQTPDYFKSDRANNSWDEPEAS 229


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 376 GDSTNYGWTSGLGQQERTSCH*HKQTNR 459
           G+ TN GW   +  Q++ S   H+ TNR
Sbjct: 588 GEGTNRGWNDFVDGQDKESIKGHRNTNR 615


>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
          Length = 356

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 629 NDGIVLTITTHAGSXLEDQRLVFCDQIPSRPYRRLRCGCSYQDPTHR 489
           +DG++L +T  +    ED +       P +P++R   G  YQ  THR
Sbjct: 211 DDGLMLNLTNFS---TEDTKKSAIRTGPKKPFKRKEKGNDYQKSTHR 254


>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 178 SEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMDYSVKPVTTERFPMMT 324
           S+    ++TP+ +     WEEG +S  +DRT  +++   +T+E   + T
Sbjct: 5   SDYIADANTPLRAGNESFWEEGNTSFKFDRTREEFN-SSITSEESSIET 52


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 210 DVTWDTRMGGGKVFGTLGQNDDGLFGKAGYNREISNDDRGQLTGQAYGTXG 362
           D++ D ++  GK   T+ +  +    K+ YN+ + N + G  T   +GT G
Sbjct: 166 DISEDPKISKGKSTATIFREQENE-KKSKYNQRVMNVEMGTFTPLVFGTNG 215


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 106 SSPQSWCV*TQKYTGLLIMKKNTPSEAYFQSDTPVTSRGTREWEEGRSSALWDRTTMD 279
           ++P S  + T K + L     +TPS +     TP+ S+ +  W+  R+  L +R+  +
Sbjct: 193 ATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPSTTWKVFRTKVLLERSVKE 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,165,714
Number of Sequences: 59808
Number of extensions: 653215
Number of successful extensions: 1386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2788625034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)