Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K11
         (950 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical...    29   6.5  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    28   8.5  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    28   8.5  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    28   8.5  

>AL110484-10|CAB54401.1|  237|Caenorhabditis elegans Hypothetical
           protein Y38E10A.10 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 177 IRGLF-SKRHPRDVTWDTRMGGGKVFGTLGQNDD 275
           + GL+ + R  +D+  +T   G KVF   G+NDD
Sbjct: 155 VNGLWCASRFIKDINEETHYEGSKVFSIYGRNDD 188


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 354 CRKPGRLADRGHHW---KSLCCNRLY-RIVHRRSVPKCR 250
           C   GR+A+ GHH+     L C   + R+V +++ PKC+
Sbjct: 38  CLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 354 CRKPGRLADRGHHW---KSLCCNRLY-RIVHRRSVPKCR 250
           C   GR+A+ GHH+     L C   + R+V +++ PKC+
Sbjct: 38  CLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 354 CRKPGRLADRGHHW---KSLCCNRLY-RIVHRRSVPKCR 250
           C   GR+A+ GHH+     L C   + R+V +++ PKC+
Sbjct: 38  CLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,498,038
Number of Sequences: 27780
Number of extensions: 462305
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)