Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K11
         (950 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20190.1 68418.m02405 expressed protein                             31   1.1  

>At5g20190.1 68418.m02405 expressed protein
          Length = 290

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 326 RSANRPGLRHQXS*DPEVTALTTGGRLDWANKNAQAAIDINRQIGGRSGMTASGSGV-WD 502
           R+A+   LRH  S  P V+   +GG L           D++  IG     T+S  G+ W 
Sbjct: 68  RTASDSDLRHLTSTKPPVSKFLSGGAL---------MEDVDEGIGFGLIRTSSYDGISWA 118

Query: 503 LDKNTHISAGG 535
           LD++T ++ GG
Sbjct: 119 LDEDTEVAGGG 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,287,566
Number of Sequences: 28952
Number of extensions: 434199
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)