Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K09
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    91   2e-19
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    46   7e-06
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    38   0.002
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    33   0.075
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    31   0.17 

>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 40/80 (50%), Positives = 54/80 (67%)
 Frame = +2

Query: 158 MAEQNLSSKXIFQLEDKYGCRNYXPLPVXLXRSEGVFVWDVEGKKYYDFLSAYSAIXQGH 337
           +     S++ I  LE++Y   NY PLPV   +++G  VWD EG++Y DFLSAYSA+ QGH
Sbjct: 6   LLHNTFSTEQIEVLENEYAAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGH 65

Query: 338 CHPRIIEALKKQXDNLXLVS 397
           CHP+IIEAL +Q   + L S
Sbjct: 66  CHPKIIEALVEQAQRVTLSS 85



 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 29/66 (43%), Positives = 39/66 (59%)
 Frame = +1

Query: 424 GKYXKYXT*LXGYDRLVPMNXGVEGGESACXIARIWGYXVHKIPERXPXIISAXGNFWGR 603
           G + KY T   GY+ ++PMN G E  E+AC +AR+WGY   KIP     I+S   NF GR
Sbjct: 94  GPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLWGYKAKKIPTDEAIILSCVDNFHGR 153

Query: 604 PLSAVS 621
            +  +S
Sbjct: 154 TMGIIS 159


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 24/68 (35%), Positives = 32/68 (47%)
 Frame = +2

Query: 224 YXPLPVXLXRSEGVFVWDVEGKKYYDFLSAYSAIXQGHCHPRIIEALKKQXDNLXLVSXS 403
           Y   PV   + EG +++D EG+KY DF S  +    GH HP +      Q     LV  S
Sbjct: 51  YARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSK--LVHSS 108

Query: 404 XLFRSTXA 427
            LF +  A
Sbjct: 109 NLFYNEPA 116


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 230 PLPVXLXRSEGVFVWDVEGKKYYDFLSAYSAIXQGHCHPRIIEALKKQXDNLXL 391
           P P+ +    G  + DV+G +Y DFL+  +A   GH +P I +AL +  D + +
Sbjct: 50  PFPIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGI 103


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 236 PVXLXRSEGVFVWDVEGKKYYDFLSAYSAIXQGHCHPRIIEALKKQXDNL 385
           P  + R++G  V+D +     DF S   +   GH HP I   ++K    L
Sbjct: 33  PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKL 82


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 236 PVXLXRSEGVFVWDVEGKKYYDFLSAYSAIXQGHCHPRIIEALKKQXDNLXLV 394
           P  + R+EGV+++  +G +  D     +    GH +  +I+A+ KQ + +  +
Sbjct: 28  PPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQSEKVCYI 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,218
Number of Sequences: 5004
Number of extensions: 38186
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)