Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K08
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.17 
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 277 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 170
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 437 HIMLCGSSX-YISNI*HTTVIA-FLRVTECIYYYIHILNYVSI 559
           HI  C SS  Y  +I H   +A FL +++C YY+ HIL  V +
Sbjct: 48  HIFKCLSSCNYALSILHNICLASFLYLSKC-YYHTHILTSVRL 89


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 730 PPXXXPPXXGGXPPPPXXHPP 792
           PP   PP   G  PPP   PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 730 PPXXXPPXXGGXPPPPXXHPP 792
           PP   P   G  PPPP   PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 730 PPXXXPPXXGGXPPPPXXHPPXXXRPP 810
           PP   PP     PPPP   PP    PP
Sbjct: 5   PPGNPPPP----PPPPGFEPPSQPPPP 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,826
Number of Sequences: 5004
Number of extensions: 46564
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)