Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K07
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    97   4e-21
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    95   1e-20
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.64 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.5  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   6.0  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   7.9  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 55/144 (38%), Positives = 73/144 (50%)
 Frame = +1

Query: 85  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 264
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 265 RRFNGGVGRCAQAKQFGTTQGSLAQEIRRIPLAVIEER*IKX*QQNFGR*XAXHXPHSGK 444
           RRFNGGVGR AQ K+FG TQ     +  +    +++        +           H   
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDM-DKLIIKHVQV 119

Query: 445 SXRPWLSKRKYRGPGRINPYMSXP 516
           +  P   +R YR  GR+  Y+S P
Sbjct: 120 NAAPKQRRRTYRAHGRVTAYLSSP 143



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = +2

Query: 323 RGRWPKKSAEFLLQLLRNAESNXDNKTLDVDXLVIXXIQVNRAAP 457
           + RWP KS +F   LL+NAE+N + K LD+D L+I  +QVN AAP
Sbjct: 80  QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN-AAP 123


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 55/144 (38%), Positives = 72/144 (50%)
 Frame = +1

Query: 85  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 264
           M RYS  P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PF
Sbjct: 1   MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60

Query: 265 RRFNGGVGRCAQAKQFGTTQGSLAQEIRRIPLAVIEER*IKX*QQNFGR*XAXHXPHSGK 444
           RRFNGGVGR AQ K+FG TQ     +       +++        +           H   
Sbjct: 61  RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDM-DKLIIKHVQV 119

Query: 445 SXRPWLSKRKYRGPGRINPYMSXP 516
           +  P   +R YR  GR+  Y+S P
Sbjct: 120 NAAPKQRRRTYRAHGRVTAYLSSP 143



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +2

Query: 323 RGRWPKKSAEFLLQLLRNAESNXDNKTLDVDXLVIXXIQVNRAAP 457
           + RWP KS  F   LL+NAE+N + K LD+D L+I  +QVN AAP
Sbjct: 80  QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN-AAP 123


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 784 PPXXPGXPPPPPXXXKPXXXPXAP 855
           PP  P  PPPPP    P   P  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 768 PXPXXPPXXAGXXPPPP 818
           P P  PP  AG  PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 768 PXPXXPPXXAGXXPPPPXXXQTXXXPXXPP 857
           P P   P   G  PPPP        P  PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 763 PXPXXXXPPXXPGXPPPPPXXXKPXXXPXAP 855
           P P     P   G PPPPP        P  P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 145 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 258
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 322 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 239
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 125 PAKRVVQTSVFTLRTHMRPQWQSGRCRSVVL 217
           P K      V+  R  +   W+ GRCR VVL
Sbjct: 239 PFKTRPWKEVYAERCRVECNWRHGRCRQVVL 269


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 401 FCCXHLIQRSSITARGI------RRISWASDPCVVPNCFA*AQRPTPPLKRRNGIHSFFS 240
           FC   LI   S  A+ +      R ++  +   ++PN  A   R  PP K++N I + F 
Sbjct: 122 FCIWSLISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFG 181

Query: 239 IT 234
            T
Sbjct: 182 AT 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,792
Number of Sequences: 5004
Number of extensions: 49780
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)