Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K07
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 787 PXXPGXPPPPPXXXKP 834
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
 Frame = +1

Query: 763 PXPXXXXPPXXP--GXPPPPPXXXKPXXXPXAP 855
           P P     P  P  G PP P     P   P AP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 387 FDSAFLNNCKRNSADFLGQRPLCCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNSTT 208
           F+  FLN+  ++  DF+ +   CC  +  LS   +  + A+  N+    N+   ++NS T
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCG-VHSLSDYNDKPIPASCCNS--PENNTCSISNSYT 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,506
Number of Sequences: 438
Number of extensions: 4833
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)