Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K06
         (938 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   1.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 741 PPPXXAPPRXPPXXRAPPY 797
           PP    PP+  P  R PPY
Sbjct: 68  PPSGGQPPQGMPYPRFPPY 86


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
 Frame = +2

Query: 782 PGXSXPPXG-----XPXPXXXPPPPLPXXXPP 862
           PG + PP G      P     PP PLP   PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 830 PPPPLPXXXPPPXP 871
           PPPP P   PP  P
Sbjct: 736 PPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 830 PPPPLPXXXPPPXP 871
           PPPP P   PP  P
Sbjct: 628 PPPPHPHHQPPRNP 641


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 782 PGXSXPPXGXPXPXXXPPPPLPXXXPPP 865
           PG + PP G       P P +P    PP
Sbjct: 160 PGPALPPAGFLCNNYLPLPQVPPLPLPP 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,686
Number of Sequences: 336
Number of extensions: 2819
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)