Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K06
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.57 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +3

Query: 744 PPXXAPPRXPPXXRAPPYPHXXXPXPXXNPPPPSXXXXPPP 866
           P   AP   P   ++P  P    P      PPP      PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 799 GXGGARXXGGXRGGAXXGGGGXVFXXGXGRGGGGXLG 689
           G  G+   GG   GA    GG +       GGGG LG
Sbjct: 20  GGPGSSSAGGVVTGA---SGGSIVVGANNGGGGGGLG 53



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -2

Query: 841 GGGGXXXGXGXXXWGXGGARXXGGXRGGAXXGGGG 737
           GG G     G      GG+   G   GG   GGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGG---GGGG 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 744 PPXXAPPRXPPXXRAP 791
           PP  APP  PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 680  AXXPQXTPPPPPXP 721
            A   Q  PPPPP P
Sbjct: 1349 AWRQQQPPPPPPPP 1362


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/41 (26%), Positives = 14/41 (34%)
 Frame = +3

Query: 744 PPXXAPPRXPPXXRAPPYPHXXXPXPXXNPPPPSXXXXPPP 866
           PP    P      + P + H   P P     PP+     PP
Sbjct: 356 PPRPMGPWISIQEQIPRFRHIGPPTPFPRFIPPNAYRFRPP 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,288
Number of Sequences: 438
Number of extensions: 6967
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)