Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K04
         (994 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.44 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   2.3  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   3.1  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   4.1  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   7.2  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    26   7.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    22   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 794 PSGSPXXPXAPPAXXIPXPLPLTPRXXPGXPPPXXXXP 907
           P G+P  P  PP+  I  PLP      P  PP     P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 794 PSGSPXXPXAPPAXXIPXPLP 856
           P+G P  P  PPA   P P P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAP 480


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +2

Query: 797 SGSPXXPXAPPAXXIPXPLPLTPRXXPGXPPPXXXXPXXXPXXXXPXXXXLXPPXXPXXS 976
           S +P    APP        P +    P  PPP        P    P    L PP  P   
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180

Query: 977 XXXP 988
              P
Sbjct: 181 VKSP 184


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 937 PPXPPPPXP 963
           PP PPPP P
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 940 PXPPPPXPP 966
           P PPPP PP
Sbjct: 236 PAPPPPPPP 244


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 520 KTSPXVSWKLIALWENHQGL-LQDLEHXTXPILGIGS 627
           K SP V+WK   +W + + +   D  H    ILG GS
Sbjct: 28  KASPKVNWKTHIIWRSLKNVKCIDSFHGNNEILGAGS 64


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 439 VHKXNRVFGEDKSTLNWETIPDDVL 365
           +H       EDKS L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 384 QSRTMSXESXEPKLIGVLHXVHXVXSXQSCSRHL*XLXSSSPRINAXSF 238
           + +  S ++  P L+G L  +  +   Q   R+L  L   +P++NA  F
Sbjct: 447 KGKKKSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPKVNASLF 495


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
 Frame = +2

Query: 794  PSGSPXXPXAP-PAXXIPXPLPLTPRXXPGXPPPXXXXPXXXPXXXXP 934
            P  S   P  P P+  IP P+P      P  PPP    P   P    P
Sbjct: 1162 PKPSVAAPPVPAPSSGIP-PVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +2

Query: 794  PSGSPXXPXAPPAXXIPXPLPLTPRXXPGXPPPXXXXPXXXPXXXXP 934
            P  +   P  PP    P P+P      P  PPP    P   P    P
Sbjct: 1182 PKPAAGVPPVPPPSEAP-PVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
 Frame = +2

Query: 794  PSGSPXXPXAPP-AXXIPXPLPLTPRXXPGXPPPXXXXPXXXPXXXXP-XXXXLXPPXXP 967
            P+ +P  P +   A   P P+P      P  P P    P   P    P     +  P  P
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105

Query: 968  XXSXXXP 988
              S   P
Sbjct: 1106 KPSVAVP 1112


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/51 (31%), Positives = 17/51 (33%)
 Frame = +2

Query: 815 PXAPPAXXIPXPLPLTPRXXPGXPPPXXXXPXXXPXXXXPXXXXLXPPXXP 967
           P  PPA  +P P    P   P  PPP        P    P      PP  P
Sbjct: 733 PPPPPAVIVPTP---APAPIP-VPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 910 PPXXXXXXXPPXPPPPXP 963
           PP       PP PPPP P
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = -3

Query: 965 GGXGGGGXGGXXXXXXXGGXXXXXXXGXXXXXXEXXGGGXGG 840
           GG GGG  G        GG       G         GGG GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = -3

Query: 965 GGXGGGGXGGXXXXXXXGGXXXXXXXGXXXXXXEXXGGGXGGXVXPVEPXGXAG 804
           GG  GG  GG       G        G         GG  GG    +EP   AG
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRHAG 82


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 667 DSEGHMVAVPVSADSQYQVLGTXSVQDLEVDLGGSPTE 554
           D +G +       D+QY  L   S++ LEV L G  TE
Sbjct: 117 DLQGVLQVKASPIDAQYVFLAPPSIEQLEVRLRGRGTE 154


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.2 bits (45), Expect(2) = 7.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 937 PPXPPPPXPP 966
           P  PPPP PP
Sbjct: 6   PGNPPPPPPP 15



 Score = 21.8 bits (44), Expect(2) = 7.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 946 PPPPXPPXXLXXSXP 990
           PPPP PP     S P
Sbjct: 10  PPPPPPPGFEPPSQP 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,564
Number of Sequences: 5004
Number of extensions: 35142
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)