Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_K02
         (917 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52019| Best HMM Match : Collagen (HMM E-Value=1.3)                  30   2.3  
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)                     28   9.2  

>SB_52019| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 99

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 170 ENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDGGE 298
           +NG D  DG+V   V      D D G N+ DG+  G   DGG+
Sbjct: 25  DNGDDGDDGDVDDNVCDGDGDDGDDGDNVCDGD--GDDGDGGD 65


>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 146 AIVAVNSQENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDGGE 298
           A VA ++  + GD+ DG    G D     D+D G +    + GG   DGG+
Sbjct: 185 ADVASSAVADNGDNDDGSDDDGGDNDDGSDDDDGGDDGSDDDGGDNDDGGD 235


>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
          Length = 654

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 170 ENGGDSPDGEVA--PGVDPVKVVDEDHGVNIVDGEPGGQYRDGGE 298
           + GGD  DG+     GVD   V D+  G +   G+ GG   DGG+
Sbjct: 3   DGGGDGDDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGGDDDGGD 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,624,066
Number of Sequences: 59808
Number of extensions: 175395
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)