Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_K01
(958 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.18
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.73
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 5.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.8
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.034
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = -1
Query: 865 GXXNGGGXGXXXPRGXGGGXXXVTGGXGRRXXRXGEGGRXRGVXXGGGRGEXXXRG 698
G GG G RG GG G GR R G GG RG GG G RG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG--RGGARGGRGGSSGGRG 65
Score = 31.5 bits (68), Expect = 0.18
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -1
Query: 865 GXXNGGGXGXXXPRG--XGGGXXXVTGG-XGRRXXRXGEGGRXRGVXXGGGRG 716
G NGG G RG GGG GG GR R G GG G GG +G
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKG 69
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -1
Query: 853 GGGXGXXXPRGXGGGXXXVTGGXGRRXXRXGEGGRXRGVXXGGGR 719
GGG G G GG G G R R G G RG GG +
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG-GRGGAKGGAK 72
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -1
Query: 853 GGGXGXXXPRGXGGGXXXVTGGXGRRXXRXGEGGRXRGVXXGGGRGEXXXRG 698
G G RG GG GG G R G G RG GG G RG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFG--GGRGGARGGGRGGARGGRGGRGGARG 55
Score = 26.2 bits (55), Expect = 6.8
Identities = 19/63 (30%), Positives = 19/63 (30%)
Frame = -1
Query: 928 GXXGEXXEGGXCXXGXGPXACGXXNGGGXGXXXPRGXGGGXXXVTGGXGRRXXRXGEGGR 749
G G G G G G G G RG GG GG G G GG
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG--GSSGGRGGA 67
Query: 748 XRG 740
G
Sbjct: 68 KGG 70
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 792 PVTXXXPPPXPRGXXXPXPPPXXXPHAXGPXPXXXXPPS 908
P PPP P P PPP GP P PP+
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 810 PPPXPRGXXXPXPPPXXXPHAXGPXPXXXXPPSXXSPXXPTXLHXXXPP 956
PPP P P P P P P P PP P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 789 PPVTXXXPPPXPRGXXXPXPPPXXXPHAXGPXPXXXXPPSXXSPXXP 929
PPV P P PPP P P PPS P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.73
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = -1
Query: 880 GPXACGXXNGGGXGXXXPRGX-GGGXXXVTGGXGRRXXRXGEGGRXRGVXXGGGRG 716
GP G G G RG GG GG R G G RG GG RG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 28/102 (27%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Frame = +3
Query: 609 PXGLSTIPX---AFSPRXAPSRALLXPTXXLTXPLSXXSPLPPPXXTPRXXXXXXXXXXX 779
P G +P A P APS A P + P P+P P +
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP-----PVPAP--SSGIPPVPKPAAGV 1188
Query: 780 XXXPPVTXXXPPPXPRGXXXPXPPPXXXPHAXGPXPXXXXPP 905
PP + P P P P PPP P P P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV--PTPSAGLPP 1228
Score = 27.1 bits (57), Expect = 3.9
Identities = 25/94 (26%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Frame = +3
Query: 630 PXAFSPRXAPSRALLXPTXXLTXP-LSXXSPLPPPXXTPRXXXXXXXXXXXXXXPPVTXX 806
P P APS P + P + S PP P PV
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
Query: 807 XPP-PXPRGXXXPXPPPXXXPHAXGPXPXXXXPP 905
PP P P P P P P P P PP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPV--PKPSVAAPP 1170
Score = 26.6 bits (56), Expect = 5.2
Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Frame = +3
Query: 609 PXGLSTIPX---AFSPRXAPSRALLXPTXXLTXPLSXXSPLPPPXXTPRXXXXXXXXXXX 779
P G +P A P APS + + P + P+PPP P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGI----PPVPKPAAGVPPVPPPSEAP---PVPKPSVGV 1207
Query: 780 XXXPPVTXXXPPPXPRGXXXPXPPP 854
PP + P P P P P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -1
Query: 817 GGGXXXVTGGXGRRXXRXGEG--GRXRGVXXGGGRGEXXXRGXVS 689
GGG GG G R G G G RG GG R RG V+
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVA 490
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.2
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = -1
Query: 907 EGGXCXXGXGPXACGXXNGGGXGXXXPRGXGGGXXXVTGGXG 782
EGG G GP G GG G P G GGG GG G
Sbjct: 234 EGGPGGFGGGPGGFGGGLGGFGG--GPGGFGGGPGG-HGGPG 272
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 789 PPVTXXXPPPXPRGXXXPXPPPXXXPHAXGPXP 887
P V PPP R P PP HA P
Sbjct: 738 PAVKHHPPPPPVRSSISPSMPPAPLTHANSSTP 770
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 5.2
Identities = 24/101 (23%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Frame = +3
Query: 642 SPRXAPSRALLXPTXXLTXPLSXXSPLPPPXXTPRXXXXXXXXXXXXXXPPVTXXX--PP 815
SP +P R + + + PLPPP PP + P
Sbjct: 266 SPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKP 325
Query: 816 PXPRGXXX---PXPPPXXXPHAXGPXPXXXXPPSXXSPXXP 929
P G P PPP +A G P S P P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 26.6 bits (56), Expect = 5.2
Identities = 28/110 (25%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Frame = +3
Query: 603 RHPXGLSTIPXAFSPRXAPSRALLXPTXXLTXPLSXXSPLP-PPXXTPRXXXXXXXXXXX 779
R P LS+ +P AP A+ + PL S PP TP
Sbjct: 374 RQPPPLSSSRAVSNP-PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432
Query: 780 XXXPP---VTXXXPPPXPRGXXXPXPPPXXXPHAXGPXPXXXXPPSXXSP 920
PP + PP P P P P A P PP +P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Frame = +3
Query: 789 PPVTXXXPPPX-PRGXXXPXPPPXXXPHAXGPXPXXXXPP 905
PP+ PPP P P P A P P PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,046
Number of Sequences: 5004
Number of extensions: 40897
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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