Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J24
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 276 GSLMFMFFVT-AVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHR-ICFTTCLIFCV 449
           G+ M  +F+  A+  +   L     +L L +++   G+ +     + + I + TC++ C 
Sbjct: 55  GAFMVPYFIALALAGVPMFLM----ELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCW 110

Query: 450 ITIYYM 467
             IYY+
Sbjct: 111 TNIYYI 116


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 276 GSLMFMFFVT-AVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVHR-ICFTTCLIFCV 449
           G+ M  +F+  A+  +   L     +L L +++   G+ +     + + I + TC++ C 
Sbjct: 108 GAFMVPYFIALALAGVPMFLM----ELSLGQMMTIGGLGVFKIAPIFKGIGYATCVLSCW 163

Query: 450 ITIYYM 467
             IYY+
Sbjct: 164 TNIYYI 169


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 859 PXXPPSXSPXPXAXXXPXXPXXXXPPPPXXPP 954
           P   PS    P A      P     PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/33 (30%), Positives = 10/33 (30%)
 Frame = +1

Query: 883 PXPXAXXXPXXPXXXXPPPPXXPPXXXXPXXXP 981
           P P     P  P    PP P   P    P   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,084
Number of Sequences: 438
Number of extensions: 6400
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)