Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_J23
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.14 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.33 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   9.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 831 PXRSLSXVLPGXXPPPXPPPXPPPXPPPXPPXXPPP 938
           P    S   P    PP P   PPP  PP  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 27.1 bits (57), Expect = 0.25
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
 Frame = +3

Query: 858 PGXXPPPXPPPXPPP-XPPPXPPXXPPP 938
           PG  P P   P  P    PP P   PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.33
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 919 GXGGGXGGGXGGGXGGGXXPGRT 851
           G G G G G GG  G G   GRT
Sbjct: 79  GRGKGRGHGKGGSRGRGGNRGRT 101


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 843 LSXVLPGXXPPPXPPPXPPPXPPPXP 920
           ++ VL     PP P P PPP     P
Sbjct: 328 VNIVLGDSDTPPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 885 PPXPPPXPPPXPPXXP 932
           PP P P PPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 894 PPPXPPPXPPXXPPP 938
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 909 PPXPPXXPPPP 941
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 870  PPPXPPP 890
            PPP PPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 894  PPPXPPP 914
            PPP PPP
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 940 GGGGXXGGXGGGXGGGXGGGXG 875
           GG    G   GG GGG G   G
Sbjct: 36  GGSIVVGANNGGGGGGLGIASG 57



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 937 GGGXXGGXGGGXGGGXGGGXGGG 869
           GG   G  GG    G   G GGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGG 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 381 LDTKKLLLRLSVLPRASDFYKIR 313
           LDTKK   ++S L   +D Y ++
Sbjct: 379 LDTKKWNNKISALRALNDLYNVK 401


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 170 SFDECMHIGEADSQQDNQQLVHFGY 96
           S D  + +   D+Q+DN Q++ + Y
Sbjct: 298 SKDSLVFVDNHDTQRDNPQILTYKY 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,086
Number of Sequences: 438
Number of extensions: 7882
Number of successful extensions: 35
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)